JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF445_chr3_44426705_44482670	0/0	t0139	15214	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0140	15214	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0141	15216	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0142	15217	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0143	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0144	15219	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0145	15224	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0146	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0147	15229	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0148	15212	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF446_chr19_58471352_58486230	1/1	t0001	698	353	53	62	191	17	28	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0002	698	49	12	18	11	1	7	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0003	698	14	14	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0004	698	8	7	1	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0005	698	3	2	1	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0006	698	1	0	0	0	0	1	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0007	698	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0008	698	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0009	698	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0010	698	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0011	698	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	t0012	698	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF449_chrX_135339796_135368413	1/1	t0001	2478	238	39	49	116	9	23	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0002	2478	34	12	5	17	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0003	2478	11	10	1	0	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0004	2478	3	3	0	0	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0005	2478	2	0	0	2	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0006	2478	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0007	2477	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0008	2478	1	0	1	0	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0009	2478	1	0	0	0	0	1	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0010	2478	1	0	1	0	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	t0011	2479	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF44_chr19_12266808_12299883	1/0	t0001	789	166	15	37	91	6	16	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/1	t0002	789	93	16	21	48	4	3	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0003	787	58	41	4	9	2	2	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0004	790	9	0	0	4	0	5	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0005	789	7	7	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0006	790	6	5	1	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0007	790	5	0	0	5	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0008	790	4	0	0	3	0	1	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0009	789	4	3	0	0	0	1	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0010	788	4	4	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0011	788	2	0	0	2	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0012	788	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0013	787	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0014	789	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0015	788	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0016	787	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	t0017	790	1	0	1	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883