JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF468_chr19_52833010_52862619	0/0	t0002	2838	81	5	18	42	4	12	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/1	t0003	2837	50	9	11	19	5	5	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0004	2837	37	5	12	14	2	4	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0005	2837	33	12	3	6	2	10	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0006	2837	25	7	5	6	1	6	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0007	2833	11	0	0	11	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0008	2836	9	8	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0009	2837	7	6	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0010	2837	7	6	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0011	2837	5	5	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0012	2837	4	4	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0013	2838	3	2	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0014	2837	3	3	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0015	2837	3	3	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0016	2837	2	2	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0017	2837	2	2	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0018	2837	2	2	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0019	2837	2	0	2	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0020	2837	2	0	0	2	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0021	2838	2	0	0	2	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0022	2837	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0023	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0024	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0025	2837	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0026	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0027	2837	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0028	2837	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0029	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0030	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0031	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0032	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0033	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0034	2838	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0035	2837	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0036	2837	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0037	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0038	2838	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0039	2838	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0040	2838	1	0	1	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0041	2838	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0042	2838	1	0	0	1	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0043	2837	1	1	0	0	0	0	copy fasta	ZNF468	chr19	52833010	52862619
ZNF468_chr19_52833010_52862619	0/0	t0044	2837	1	0	0	0	0	1	copy fasta	ZNF468	chr19	52833010	52862619
ZNF469_chr16_88377959_88445753	0/1	t0001	1935	161	25	39	67	5	24	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0002	1909	64	10	9	34	4	7	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0003	1909	22	12	3	6	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0004	1937	16	15	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0005	1935	13	4	4	1	3	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0006	1909	13	1	4	6	0	2	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0007	1936	10	7	3	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753