JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF516_chr18_76352682_76500242	0/0	t0072	5191	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0073	5204	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0074	5205	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0075	5202	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0076	5190	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0077	5191	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0078	5191	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0079	5190	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0080	5190	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0081	5190	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0082	5194	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0083	5190	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0084	5195	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0085	5199	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0086	5199	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0087	5196	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0088	5197	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0089	5187	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0090	5200	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0091	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0092	5187	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0093	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0094	5187	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0095	5189	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0096	5189	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0097	5193	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0098	5193	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0099	5197	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0100	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0101	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0102	5188	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0103	5188	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0104	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0105	5188	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0106	5187	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0107	5187	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0108	5187	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0109	5187	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	1/0	t0110	5187	1	0	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0111	5188	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0112	5186	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0113	5189	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0114	5190	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0115	5191	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0116	5192	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0117	5193	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0118	5194	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0119	5197	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0120	5197	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0121	5186	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242