JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF516_chr18_76352682_76500242	0/0	t0172	5192	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0173	5194	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0174	5187	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0175	5181	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0176	5181	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0177	5181	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0178	5180	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0179	5181	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/1	t0180	5183	1	0	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0181	5193	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0182	5192	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0183	5189	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0184	5191	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0185	5192	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0186	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0187	5194	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0188	5192	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0189	5189	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0190	5191	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0191	5194	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0192	5193	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0193	5193	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0194	5187	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0195	5187	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0196	5192	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0197	5194	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0198	5191	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0199	5183	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0200	5188	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0201	5189	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0202	5188	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0203	5202	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0204	5173	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0205	5192	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0206	5189	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0207	5189	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0208	5181	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF517_chr8_144793913_144815084	1/0	t0001	1760	95	16	21	45	3	9	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0002	1760	94	3	18	67	1	5	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0003	1756	89	19	18	34	3	15	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0004	1760	24	6	9	0	5	4	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0005	1756	13	1	0	9	1	2	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/1	t0006	1760	11	0	4	1	1	4	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0007	1756	8	0	4	3	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0008	1756	8	0	2	5	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0009	1760	6	6	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0010	1756	5	5	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0011	1756	4	3	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0012	1760	4	1	0	2	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0013	1755	4	4	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084