JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF519_chr18_14094938_14137435	0/0	t0019	5138	2	2	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0020	5138	2	2	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0021	5138	2	0	0	0	0	2	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0022	5138	1	0	1	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0023	5138	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0024	5138	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0025	5138	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0026	5138	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0027	5138	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0028	5138	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0029	5138	1	0	1	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0030	5138	1	1	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0031	5138	1	1	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0032	5138	1	1	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0033	5138	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0034	5138	1	0	0	0	1	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF521_chr18_25056924_25357166	1/1	t0001	951	211	77	29	70	8	25	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	t0002	951	2	0	1	0	0	1	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	t0003	951	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	t0004	951	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	t0005	951	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF524_chr19_55595288_55608138	1/1	t0001	391	416	88	87	173	18	48	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	t0002	391	3	3	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	t0003	391	3	3	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	t0004	391	2	2	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	t0005	391	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	t0006	391	1	0	1	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF525_chr19_53360705_53391590	0/1	t0001	4699	92	6	30	39	5	11	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0002	4694	67	6	8	48	2	3	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0003	4699	33	0	8	25	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0004	4700	24	6	2	15	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0005	4700	23	3	4	7	4	5	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0006	4699	18	8	5	0	3	2	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0007	4694	16	6	2	7	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0008	4694	15	1	5	1	1	7	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0009	4699	10	9	0	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	1/0	t0010	4694	10	0	0	9	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0011	4700	9	2	1	6	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0012	4694	9	0	1	8	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0013	4700	9	3	0	6	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0014	4568	8	7	1	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0015	4699	7	0	0	0	0	7	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0016	4694	6	0	1	2	2	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0017	4699	5	0	2	1	1	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0018	4700	4	4	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0019	4699	4	1	3	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0020	4699	4	4	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0021	4699	4	4	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0022	4699	4	0	0	3	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0023	4694	4	1	1	2	0	0	copy fasta	ZNF525	chr19	53360705	53391590