JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF528_chr19_52392849_52423401	0/0	t0005	2110	7	1	4	2	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0006	2110	6	6	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0007	2110	4	4	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0008	2110	3	3	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0009	2110	3	3	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0010	2108	2	0	0	2	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0011	2110	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0012	2110	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0013	2110	2	0	2	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0014	2110	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0015	2110	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0016	2110	2	2	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0017	2108	1	0	1	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0018	2110	1	1	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0019	2110	1	0	1	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0020	2110	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0021	2110	1	1	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0022	2108	1	0	0	0	0	1	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0023	2110	1	1	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0024	2110	1	1	0	0	0	0	copy fasta	ZNF528	chr19	52392849	52423401
ZNF529_chr19_36538613_36578292	0/0	t0001	3453	63	12	11	26	3	11	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0002	3451	53	1	13	28	5	6	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0003	3449	40	17	6	14	0	3	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	1/0	t0004	3453	31	0	3	27	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/1	t0005	3454	27	4	11	6	1	4	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0006	3455	15	1	10	0	2	2	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0007	3474	10	0	0	8	2	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0008	3449	9	9	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0009	3468	7	1	3	1	0	2	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0010	3453	7	0	0	7	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0011	3451	7	0	0	7	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0012	3451	6	6	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0013	3455	5	5	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0014	3462	5	4	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0015	3470	5	0	1	3	1	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0016	3451	5	0	5	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0017	3453	5	1	0	1	1	2	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0018	3454	5	5	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0019	3455	4	1	1	1	1	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0020	3460	3	3	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0021	3474	3	0	1	2	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0022	3456	3	2	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0023	3453	2	2	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0024	3453	2	0	0	2	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0025	3454	2	2	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0026	3462	2	1	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0027	3464	2	2	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0028	3466	2	1	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0029	3472	2	0	1	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0030	3476	2	0	1	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292