JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF529_chr19_36538613_36578292	0/0	t0031	3456	2	1	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0032	3453	2	0	1	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0033	3455	2	0	0	1	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0034	3453	2	0	0	2	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0035	3451	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0036	3453	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0037	3449	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0038	3451	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0039	3451	1	0	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0040	3461	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0041	3464	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0042	3469	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0043	3471	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0044	3476	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0045	3451	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0046	3462	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0047	3455	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0048	3456	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0049	3451	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0050	3453	1	0	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0051	3453	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0052	3455	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0053	3455	1	0	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0054	3459	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0055	3470	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0056	3453	1	0	0	0	0	1	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0057	3457	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0058	3457	1	0	1	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0059	3451	1	1	0	0	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF529_chr19_36538613_36578292	0/0	t0060	3453	1	0	0	1	0	0	copy fasta	ZNF529	chr19	36538613	36578292
ZNF530_chr19_57594885_57615098	0/0	t0001	3144	145	38	27	53	9	18	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	1/1	t0002	3145	114	2	22	73	1	14	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0003	3144	40	10	2	27	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0004	3145	32	2	6	20	2	2	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0005	3143	20	3	1	10	2	4	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0006	3144	9	9	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0007	3144	8	0	4	1	0	3	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0008	3144	7	5	2	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0009	3145	6	0	0	6	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0010	3144	5	0	3	0	0	2	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0011	3145	5	5	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0012	3145	4	3	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0013	3145	4	4	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0014	3144	4	4	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0015	3144	3	0	2	0	1	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0016	3144	3	0	0	0	1	2	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0017	3145	3	3	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0018	3146	3	0	0	3	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0019	3144	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0020	3143	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098