JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF530_chr19_57594885_57615098	0/0	t0021	3143	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0022	3144	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0023	3144	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0024	3144	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0025	3144	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0026	3144	2	2	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0027	3145	2	1	1	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0028	3145	2	0	0	2	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0029	3144	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0030	3144	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0031	3144	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0032	3144	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0033	3144	1	0	0	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0034	3145	1	0	0	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0035	3144	1	0	0	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0036	3145	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0037	3146	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0038	3145	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0039	3146	1	1	0	0	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0040	3145	1	0	0	1	0	0	copy fasta	ZNF530	chr19	57594885	57615098
ZNF530_chr19_57594885_57615098	0/0	t0041	3145	1	0	0	0	0	1	copy fasta	ZNF530	chr19	57594885	57615098
ZNF532_chr18_58859877_58991480	1/0	t0001	2651	129	34	36	36	7	15	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0002	2653	78	9	14	45	5	5	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0003	2653	48	6	10	26	0	6	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0004	2652	42	23	5	14	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0005	2651	12	3	2	5	1	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0006	2650	9	5	2	1	0	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0007	2654	6	1	0	4	1	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0008	2652	5	0	1	4	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0009	2650	3	0	0	3	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0010	2651	3	0	0	3	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0011	2651	3	3	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/1	t0012	2647	2	0	0	0	0	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0013	2624	2	1	1	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0014	2651	2	2	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0015	2647	2	2	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0016	2652	1	0	0	0	0	1	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0017	2651	1	1	0	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0018	2654	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0019	2653	1	0	1	0	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0020	2650	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0021	2653	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0022	2651	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF532_chr18_58859877_58991480	0/0	t0023	2653	1	0	0	1	0	0	copy fasta	ZNF532	chr18	58859877	58991480
ZNF534_chr19_52424148_52447499	0/0	t0001	3201	160	16	22	92	9	21	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	1/0	t0002	3218	61	0	3	54	1	2	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0003	3202	35	1	4	23	1	6	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/1	t0004	3201	29	4	16	0	2	6	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0005	3202	19	16	3	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0006	3219	14	0	6	7	1	0	copy fasta	ZNF534	chr19	52424148	52447499