JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF534_chr19_52424148_52447499	0/0	t0007	3200	13	6	4	0	0	3	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0008	3200	12	0	1	11	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0009	3200	8	4	4	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0010	3200	5	1	1	1	0	2	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0011	3216	5	5	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0012	3200	5	5	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0013	3201	5	0	1	3	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0014	3218	4	0	0	4	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0015	3201	4	4	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0016	3203	3	2	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0017	3202	3	1	1	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0018	3201	3	0	0	3	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0019	3201	3	0	1	0	2	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0020	3201	3	3	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0021	3218	3	2	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0022	3220	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0023	3218	2	0	0	2	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0024	3201	2	0	2	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0025	3202	2	0	0	0	0	2	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0026	3202	2	1	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0027	3218	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0028	3217	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0029	3200	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0030	3201	2	2	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0031	3219	1	0	0	0	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0032	3218	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0033	3218	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0034	3217	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0035	3217	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0036	3211	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0037	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0038	3202	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0039	3202	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0040	3202	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0041	3209	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0042	3209	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0043	3203	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0044	3202	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0045	3199	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0046	3202	1	0	0	0	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0047	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0048	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0049	3199	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0050	3200	1	0	0	0	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0051	3198	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0052	3201	1	0	0	0	1	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0053	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0054	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0055	3201	1	0	0	0	1	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0056	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499