JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF544_chr19_58223914_58268644	0/0	t0002	1152	132	15	23	74	5	15	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/1	t0003	1153	57	10	20	10	8	8	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0004	1155	33	11	11	9	0	2	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0005	1153	13	12	1	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0006	1155	9	8	0	0	0	1	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0007	1155	2	2	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0008	1153	2	2	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0009	1152	2	2	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0010	1155	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0011	1155	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0012	1153	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	t0013	1155	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF546_chr19_39992060_40026038	1/1	t0001	5490	81	17	17	38	3	4	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0002	5494	37	1	5	28	0	3	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0003	5491	24	4	8	9	0	3	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0004	5492	15	15	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0005	5493	6	6	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0006	5492	6	5	1	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0007	5494	6	6	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0008	5495	5	3	0	2	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0009	5492	4	1	1	2	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0010	5491	4	0	4	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0011	5493	3	3	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0012	5494	3	3	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0013	5492	3	3	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0014	5491	2	0	1	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0015	5495	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0016	5489	2	0	0	2	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0017	5490	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0018	5490	2	0	0	2	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0019	5490	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0020	5490	2	0	2	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0021	5493	2	0	0	2	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0022	5494	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0023	5496	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0024	5490	2	0	2	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0025	5492	2	2	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0026	5495	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0027	5494	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0028	5495	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0029	5492	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0030	5493	1	0	0	0	0	1	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0031	5494	1	0	0	0	1	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0032	5495	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0033	5491	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0034	5490	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0035	5490	1	0	1	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0036	5490	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0037	5491	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0038	5491	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038