JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF546_chr19_39992060_40026038	0/0	t0039	5492	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0040	5492	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0041	5493	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0042	5490	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0043	5494	1	0	0	0	0	1	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0044	5492	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0045	5493	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0046	5494	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0047	5492	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	t0048	5493	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF547_chr19_57358551_57384565	0/0	t0001	1546	202	26	38	101	10	27	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0002	1546	59	27	14	13	3	2	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	1/1	t0003	1546	58	2	4	45	2	3	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0004	1546	21	1	3	11	1	5	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0005	1546	19	18	1	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0006	1546	12	12	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0007	1546	10	0	2	8	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0008	1546	8	2	0	3	0	3	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0009	1546	4	1	1	0	0	2	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0010	1546	3	2	1	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0011	1546	2	0	0	2	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0012	1546	2	0	0	2	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0013	1546	1	1	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	t0014	1546	1	0	0	1	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF548_chr19_57384854_57407992	0/1	t0001	3350	112	8	13	73	5	12	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0002	3350	78	1	14	54	1	8	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0003	3350	66	4	14	41	1	6	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0004	3350	44	19	10	9	3	3	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0005	3350	28	8	3	9	1	7	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0006	3350	10	10	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0007	3350	8	8	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0008	3350	7	1	5	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0009	3350	6	0	4	0	2	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0010	3350	5	4	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0011	3350	5	4	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0012	3350	5	0	0	5	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0013	3350	4	3	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0014	3350	4	0	0	2	0	2	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0015	3350	4	4	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0016	3350	3	0	1	1	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0017	3351	2	2	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	1/0	t0018	3350	2	0	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0019	3350	2	0	0	0	2	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0020	3350	2	2	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0021	3350	2	0	1	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0022	3351	2	2	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0023	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0024	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0025	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0026	3351	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992