JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF551_chr19_57676977_57695648	0/0	t0013	2535	4	0	0	4	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0014	2552	3	0	2	0	0	1	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0015	2544	2	0	0	2	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0016	2542	2	0	0	0	2	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0017	2558	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0018	2534	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0019	2550	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0020	2546	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0021	2550	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0022	2554	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0023	2542	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0024	2547	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0025	2548	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0026	2560	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0027	2546	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0028	2550	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0029	2540	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0030	2544	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0031	2544	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0032	2542	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0033	2548	1	0	0	0	0	1	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0034	2548	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0035	2534	1	0	0	0	0	1	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0036	2547	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0037	2534	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF552_chr19_57802082_57819913	1/1	t0001	1129	339	74	61	154	13	35	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0002	1129	61	7	10	31	2	11	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0003	1129	10	0	6	0	3	1	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0004	1129	5	5	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0005	1129	4	4	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0006	1129	3	3	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0007	1129	2	1	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0008	1129	1	0	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0009	1129	1	0	0	1	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0010	1129	1	0	0	1	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0011	1129	1	0	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0012	1129	1	0	0	0	0	1	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0013	1129	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0014	1129	1	0	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0015	1129	1	0	0	1	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0016	1129	1	0	1	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	t0017	1129	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF554_chr19_2814868_2841735	0/0	t0001	2006	71	1	20	44	2	4	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0002	2090	67	9	21	26	2	9	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0003	2090	53	14	3	28	0	8	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0004	2006	45	0	5	35	1	4	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0005	2089	34	2	5	21	1	5	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0006	2089	18	1	2	8	0	7	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/1	t0007	2089	15	3	8	0	2	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0008	2089	15	12	2	0	1	0	copy fasta	ZNF554	chr19	2814868	2841735