JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF560_chr19_9461355_9503616	0/0	t0007	443	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0008	443	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0009	443	1	0	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0010	496	1	0	0	1	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0011	443	1	0	0	0	0	1	copy fasta	ZNF560	chr19	9461355	9503616
ZNF561_chr19_9602329_9626232	1/1	t0001	3069	231	13	33	135	11	37	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0002	3067	41	13	11	8	2	7	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0003	3067	21	2	17	0	1	1	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0004	3069	13	8	1	4	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0005	3069	11	11	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0006	3067	8	7	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0007	3067	7	7	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0008	3069	6	6	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0009	3067	5	5	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0010	3067	5	5	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0011	3069	5	0	0	5	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0012	3069	3	3	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0013	3069	3	3	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0014	3067	3	3	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0015	3069	2	2	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0016	3067	2	0	2	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0017	3069	2	0	0	2	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0018	3069	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0019	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0020	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0021	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0022	3069	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0023	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0024	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0025	3067	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0026	3069	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0027	3069	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0028	3069	1	0	0	1	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0029	3069	1	0	0	1	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0030	3069	1	0	1	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0031	3069	1	0	0	1	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0032	3069	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0033	3069	1	0	0	1	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0034	3069	1	1	0	0	0	0	copy fasta	ZNF561	chr19	9602329	9626232
ZNF561_chr19_9602329_9626232	0/0	t0035	3069	1	0	0	0	0	1	copy fasta	ZNF561	chr19	9602329	9626232
ZNF562_chr19_9636807_9680100	0/0	t0001	11358	29	3	6	10	3	7	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0002	11359	14	4	3	5	0	2	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0003	11358	9	1	6	0	0	2	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0004	11374	8	5	2	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0005	11360	7	2	0	4	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0006	11359	6	4	2	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0007	11375	6	1	3	2	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0008	11359	5	0	0	5	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0009	11357	4	0	0	4	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0010	11358	4	0	0	4	0	0	copy fasta	ZNF562	chr19	9636807	9680100