JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF573_chr19_37733302_37784586	0/1	t0001	256	204	37	59	71	13	23	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	1/0	t0002	256	141	46	13	71	1	9	copy fasta	ZNF573	chr19	37733302	37784586
ZNF573_chr19_37733302_37784586	0/0	t0003	256	5	5	0	0	0	0	copy fasta	ZNF573	chr19	37733302	37784586
ZNF574_chr19_42071166_42086552	1/1	t0001	397	339	92	66	131	10	38	copy fasta	ZNF574	chr19	42071166	42086552
ZNF574_chr19_42071166_42086552	0/0	t0002	397	1	0	0	1	0	0	copy fasta	ZNF574	chr19	42071166	42086552
ZNF575_chr19_43528188_43541087	1/0	t0001	929	392	76	67	194	14	40	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/1	t0002	929	15	1	8	0	2	3	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0003	929	11	9	1	0	0	1	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0004	929	2	0	0	0	0	2	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0005	929	1	0	1	0	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0006	929	1	1	0	0	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0007	929	1	0	1	0	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0008	929	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0009	929	1	0	0	1	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	t0010	929	1	1	0	0	0	0	copy fasta	ZNF575	chr19	43528188	43541087
ZNF576_chr19_43591595_43606157	1/1	t0001	2064	353	55	72	163	18	43	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0002	2064	14	4	0	10	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0003	2063	9	8	0	1	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0004	2063	9	5	3	0	0	1	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0005	2064	5	0	0	5	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0006	2064	5	1	0	0	0	4	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0007	2064	4	4	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0008	2064	3	3	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0009	2064	3	3	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0010	2064	3	0	0	1	0	2	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0011	2064	2	0	0	2	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0012	2064	2	2	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0013	2063	2	2	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0014	2064	1	0	0	1	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0015	2064	1	0	1	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0016	2064	1	0	0	1	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0017	2064	1	1	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0018	2064	1	1	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0019	2064	1	0	1	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0020	2064	1	0	1	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	t0021	2064	1	1	0	0	0	0	copy fasta	ZNF576	chr19	43591595	43606157
ZNF577_chr19_51862048_51892951	1/1	t0001	6834	136	15	24	77	6	12	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0002	6839	37	0	3	30	1	3	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0003	6834	25	0	14	0	3	8	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0004	6835	17	4	7	1	0	5	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0005	6830	9	0	0	9	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0006	6835	8	0	2	3	1	2	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0007	6831	8	7	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0008	6831	7	6	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0009	6833	7	0	1	0	2	4	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0010	6832	6	6	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0011	6834	6	3	3	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0012	6834	6	6	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0013	6835	6	0	1	5	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0014	6834	6	5	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951