JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF577_chr19_51862048_51892951	0/0	t0065	6834	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0066	6835	1	0	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0067	6834	1	0	0	1	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0068	6836	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0069	6835	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0070	6832	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0071	6831	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0072	6835	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0073	6835	1	0	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0074	6835	1	0	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0075	6835	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0076	6834	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0077	6833	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0078	6833	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0079	6839	1	0	0	0	0	1	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0080	6839	1	0	0	0	0	1	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0081	6840	1	0	0	0	0	1	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0082	6839	1	0	0	1	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0083	6843	1	0	0	1	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0084	6842	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0085	6836	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0086	6836	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0087	6837	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0088	6830	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0089	6834	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	t0090	6836	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF578_chr19_52448553_52521882	0/0	t0001	4986	50	0	10	36	0	4	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0002	4997	45	0	9	25	2	9	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0003	4986	39	11	8	15	0	5	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0004	4985	22	9	3	3	1	6	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0005	4993	18	18	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0006	4997	16	3	7	0	2	4	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	1/0	t0007	4996	13	0	1	10	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0008	4997	11	0	2	5	2	2	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0009	4987	9	1	0	8	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0010	4996	8	0	3	3	0	2	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0011	4996	8	8	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0012	4997	8	3	1	4	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0013	4996	8	0	5	1	2	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0014	4986	6	0	3	0	0	3	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0015	5000	5	3	2	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0016	4991	5	4	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0017	4985	4	3	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0018	4993	4	2	2	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0019	4998	4	0	1	3	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0020	4985	4	0	0	4	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0021	4987	4	0	0	3	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0022	4988	3	0	0	3	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0023	4999	3	2	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0024	4985	3	0	2	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882