JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF578_chr19_52448553_52521882	0/0	t0075	4987	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0076	4986	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0077	4985	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0078	4986	1	0	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0079	4987	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0080	4997	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0081	4986	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0082	4998	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/1	t0083	4998	1	0	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0084	4996	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0085	4997	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF579_chr19_55571774_55585848	1/0	t0001	1234	249	19	48	151	10	20	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/1	t0002	1234	113	36	36	12	3	25	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0003	1234	15	15	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0004	1234	15	14	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0005	1234	12	11	1	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0006	1234	5	0	3	0	1	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0007	1234	2	2	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0008	1234	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0009	1234	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0010	1234	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0011	1234	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	t0012	1234	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF57_chr19_2895928_2923473	0/0	t0001	303	301	65	63	127	15	31	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	1/0	t0002	303	85	29	8	37	0	10	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0003	303	6	0	1	0	1	4	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0004	303	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0005	303	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0006	303	1	0	0	0	0	1	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0007	303	1	1	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/1	t0008	303	1	0	0	0	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	t0009	185	1	0	0	1	0	0	copy fasta	ZNF57	chr19	2895928	2923473
ZNF580_chr19_55636002_55648470	0/1	t0001	635	153	20	34	69	7	22	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	1/0	t0002	638	81	34	8	30	2	6	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0003	635	68	21	9	32	0	6	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0004	635	39	5	21	5	3	5	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0005	635	16	1	6	1	2	6	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0006	638	14	1	7	2	0	4	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0007	638	11	1	1	9	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0008	638	5	4	1	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0009	638	2	1	1	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0010	635	2	2	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0011	628	1	0	0	1	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0012	635	1	1	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0013	638	1	0	0	1	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0014	635	1	0	0	0	0	1	copy fasta	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	t0015	620	1	1	0	0	0	0	copy fasta	ZNF580	chr19	55636002	55648470
ZNF581_chr19_55638649_55650623	1/1	t0001	604	397	96	88	147	14	50	copy fasta	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	t0002	604	1	0	0	1	0	0	copy fasta	ZNF581	chr19	55638649	55650623
ZNF582_chr19_56377751_56398534	1/1	t0001	1508	433	60	80	228	16	47	copy fasta	ZNF582	chr19	56377751	56398534