JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF582_chr19_56377751_56398534	0/0	t0002	1508	16	13	3	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0003	1508	7	7	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0004	1507	6	6	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0005	1508	4	4	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0006	1508	3	0	0	3	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0007	1507	2	2	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0008	1508	2	2	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0009	1507	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0010	1507	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0011	1507	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0012	1508	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0013	1508	1	0	0	1	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0014	1508	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0015	1508	1	0	1	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0016	1508	1	1	0	0	0	0	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0017	1508	1	0	0	0	0	1	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0018	1508	1	0	0	0	0	1	copy fasta	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	t0019	1508	1	0	0	0	0	1	copy fasta	ZNF582	chr19	56377751	56398534
ZNF583_chr19_56399332_56432364	0/1	t0001	3210	139	7	26	79	5	21	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	1/0	t0002	3207	86	26	25	19	7	8	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0003	3209	19	19	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0004	3209	19	19	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0005	3210	9	0	3	5	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0006	3207	7	7	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0007	3206	6	2	1	0	0	3	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0008	3209	5	0	0	5	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0009	3210	5	5	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0010	3211	4	0	0	4	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0011	3210	3	0	2	0	1	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0012	3207	3	0	2	0	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0013	3207	3	0	0	3	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0014	3210	3	0	0	0	0	3	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0015	3207	2	2	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0016	3210	2	0	1	0	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0017	3210	2	0	0	2	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0018	3208	2	0	0	0	1	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0019	3207	1	0	0	0	1	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0020	3209	1	0	0	0	1	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0021	3210	1	0	0	1	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0022	3207	1	0	0	0	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0023	3207	1	0	0	1	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0024	3207	1	0	0	1	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0025	3210	1	0	0	0	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0026	3210	1	0	0	1	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0027	3207	1	1	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0028	3210	1	0	0	0	0	1	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0029	3207	1	1	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0030	3210	1	0	0	1	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF583_chr19_56399332_56432364	0/0	t0031	3206	1	1	0	0	0	0	copy fasta	ZNF583	chr19	56399332	56432364
ZNF584_chr19_58403649_58423327	0/0	t0001	1043	177	14	33	99	7	24	copy fasta	ZNF584	chr19	58403649	58423327