JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF605_chr12_132913306_132961306	0/0	t0038	7424	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0039	7424	1	0	0	0	1	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0040	7425	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0041	7416	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0042	7417	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0043	7417	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0044	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0045	7416	1	0	0	0	1	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0046	7416	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0047	7414	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0048	7415	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0049	7414	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0050	7413	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0051	7415	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0052	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0053	7417	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF606_chr19_57972076_58007820	1/1	t0001	1702	171	9	36	100	8	16	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0002	1702	113	22	20	58	2	11	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0003	1703	46	18	7	14	3	4	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0004	1703	8	0	7	0	1	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0005	1702	6	6	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0006	1703	6	6	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0007	1702	5	5	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0008	1702	3	3	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0009	1702	3	0	0	3	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0010	1702	3	0	0	3	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0011	1702	3	2	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0012	1703	2	1	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0013	1689	2	2	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0014	1703	2	2	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0015	1702	2	0	0	1	0	1	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0016	1702	1	0	0	0	0	1	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0017	1703	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0018	1689	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0019	1689	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0020	1703	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0021	1702	1	0	1	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0022	1702	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0023	1702	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0024	1702	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0025	1702	1	0	0	0	0	1	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0026	1702	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0027	1703	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0028	1702	1	0	0	1	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0029	1703	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF606_chr19_57972076_58007820	0/0	t0030	1703	1	1	0	0	0	0	copy fasta	ZNF606	chr19	57972076	58007820
ZNF607_chr19_37691371_37724761	1/0	t0001	2237	100	18	9	58	1	13	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0002	2237	96	32	18	23	8	15	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0003	2237	53	5	22	11	6	9	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0004	2237	48	17	10	20	0	1	copy fasta	ZNF607	chr19	37691371	37724761