JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF627_chr19_11592483_11624161	0/0	t0009	1418	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0010	1418	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0011	1418	1	0	0	0	1	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0012	1418	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	t0013	1418	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF628_chr19_55471617_55489487	1/1	t0001	383	414	93	75	178	18	48	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	t0002	383	5	4	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	t0003	383	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	t0004	383	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	t0005	383	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF629_chr16_30773456_30792205	0/1	t0001	3474	242	67	52	84	8	30	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0002	3474	14	0	10	0	2	2	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	1/0	t0003	3474	8	6	1	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0004	3474	5	0	0	5	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0005	3474	3	3	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0006	3474	2	0	0	2	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0007	3474	2	2	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0008	3474	2	0	0	2	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0009	3474	2	1	1	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0010	3474	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0011	3474	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0012	3474	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0013	3474	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0014	3474	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0015	3474	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0016	3474	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	t0017	3474	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF630_chrX_48052516_48076640	1/0	t0001	1502	165	43	22	80	4	15	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0002	1502	63	15	12	17	5	14	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0003	1502	18	0	4	13	0	1	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/1	t0004	1502	7	0	4	0	1	1	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0005	1502	3	3	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0006	1502	2	0	0	2	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0007	1502	2	0	0	2	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0008	1502	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0009	1509	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0010	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0011	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0012	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0013	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0014	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0015	1502	1	0	1	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0016	1497	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0017	1502	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0018	1502	1	0	0	0	0	1	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0019	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0020	1501	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0021	1500	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0022	1502	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	t0023	1502	1	0	1	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640