JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF648_chr1_182049570_182066712	0/0	t0007	1943	2	0	2	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0008	1943	1	0	0	0	0	1	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0009	1943	1	0	1	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0010	1943	1	0	0	1	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	t0011	1943	1	1	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF649_chr19_51884235_51910017	0/0	t0001	1675	112	18	28	52	5	9	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	1/1	t0002	1675	98	5	26	38	8	19	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0003	1675	86	23	7	46	1	9	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0004	1675	29	5	9	10	0	5	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0005	1681	17	15	2	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0006	1681	10	9	1	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0007	1675	6	3	3	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0008	1681	4	4	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0009	1675	3	0	0	3	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0010	1675	2	0	0	0	2	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0011	1675	2	2	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0012	1681	2	2	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0013	1675	2	2	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0014	1675	1	0	0	1	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0015	1675	1	0	0	1	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0016	1675	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0017	1675	1	0	0	1	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0018	1675	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0019	1675	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	t0020	1681	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF652_chr17_49284206_49367250	0/0	t0001	9796	36	8	4	14	3	7	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	1/0	t0002	9808	33	6	1	22	1	2	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0003	10019	17	0	1	11	3	2	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0004	9804	17	0	3	12	0	2	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0005	9809	11	4	1	5	1	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0006	9797	11	1	2	8	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0007	9792	10	2	2	6	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0008	9806	10	0	0	10	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0009	9807	9	0	0	1	3	5	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0010	9793	8	3	1	4	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0011	9805	7	6	1	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0012	9812	7	7	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0013	9808	6	0	4	2	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0014	9797	5	1	0	3	0	1	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/1	t0015	9809	5	0	0	3	0	1	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0016	9805	5	0	4	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0017	9798	5	0	1	4	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0018	9791	5	1	3	0	1	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0019	9797	4	0	0	4	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0020	9801	4	1	2	0	1	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0021	9797	4	0	2	0	2	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0022	9808	4	0	0	4	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0023	9810	4	3	0	1	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0024	9805	4	0	0	2	0	2	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	t0025	9806	4	2	2	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250