JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF667_chr19_56434329_56482345	0/0	t0002	2569	60	12	20	12	4	12	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0003	2570	45	0	7	35	1	2	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0004	2570	44	11	10	17	0	6	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	1/0	t0005	2569	19	6	4	3	2	3	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0006	2570	7	6	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0007	2571	7	0	1	6	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0008	2569	6	6	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0009	2571	5	1	0	1	0	3	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0010	2570	4	4	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0011	2570	4	1	2	0	0	1	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0012	2570	2	2	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0013	2570	2	0	1	0	1	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0014	2570	2	0	0	2	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0015	2570	2	0	0	2	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0016	2570	2	2	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0017	2570	2	2	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0018	2555	2	2	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0019	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0020	2569	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0021	2569	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0022	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0023	2569	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0024	2570	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0025	2571	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0026	2571	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0027	2570	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0028	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0029	2570	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0030	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0031	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0032	2570	1	0	0	0	0	1	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0033	2569	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0034	2570	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0035	2569	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0036	2571	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0037	2570	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0038	2570	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0039	2570	1	0	0	0	0	1	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0040	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0041	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0042	2569	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	t0043	2570	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF668_chr16_31055847_31079240	1/1	t0001	826	164	65	37	19	11	30	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	t0002	826	127	22	33	63	5	4	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	t0003	826	3	0	0	3	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	t0004	826	2	0	0	2	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	t0005	826	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	t0006	826	1	0	0	1	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF669_chr1_247094962_247109356	1/1	t0001	570	235	33	49	120	9	22	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	t0002	570	94	18	18	32	7	19	copy fasta	ZNF669	chr1	247094962	247109356