JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF66_chr19_20771304_20814995	0/0	t0033	2817	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0034	2818	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0035	2818	1	0	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0036	2818	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0037	2818	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0038	2814	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0039	2818	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0040	2817	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0041	2818	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0042	2818	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0043	2818	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0044	2818	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0045	2818	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0046	2817	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0047	2829	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0048	2829	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0049	2818	1	0	1	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	t0050	2818	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF670_chr1_247029637_247083811	1/1	t0001	3028	117	7	27	63	6	12	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0002	3038	23	0	2	19	0	2	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0003	3030	19	2	6	11	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0004	3034	16	13	2	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0005	3040	13	3	6	0	2	2	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0006	3040	11	0	2	6	2	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0007	3042	6	6	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0008	3034	6	5	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0009	3030	5	4	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0010	3030	5	3	2	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0011	3038	5	2	0	0	0	3	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0012	3032	4	4	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0013	3038	4	0	2	0	2	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0014	3042	4	0	1	2	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0015	3042	4	0	0	1	0	3	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0016	3036	4	1	0	1	0	2	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0017	3038	4	0	4	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0018	3026	4	4	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0019	3034	3	3	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0020	3030	3	2	0	0	1	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0021	3026	3	2	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0022	3038	3	2	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0023	3038	3	1	1	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0024	3026	3	2	1	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0025	3034	2	0	1	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0026	3036	2	0	0	0	1	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0027	3038	2	0	1	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0028	3030	2	2	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0029	3036	2	2	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0030	3036	2	2	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0031	3038	2	2	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	t0032	3026	2	0	1	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811