Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF672_chr1_248833224_248854517	0/0	t0004	1684	11	11	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0005	1687	6	6	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0006	1687	5	2	3	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0007	1687	3	3	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0008	1687	3	0	2	0	1	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0009	1687	1	0	0	1	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0010	1687	1	0	0	1	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0011	1687	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0012	1687	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	t0013	1687	1	0	0	0	0	1	copy fasta	ZNF672	chr1	248833224	248854517
ZNF674_chrX_46492725_46550421	1/1	t0001	2310	131	37	21	61	5	5	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0002	2310	60	1	13	38	3	5	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0003	2306	41	3	15	10	3	10	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0004	2308	7	6	1	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0005	2309	6	4	0	1	0	1	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0006	2309	6	0	0	4	0	2	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0007	2311	5	0	1	4	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0008	2311	4	1	0	3	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0009	2306	3	0	1	0	1	1	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0010	2306	3	3	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0011	2310	3	3	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0012	2306	2	2	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0013	2307	2	0	0	2	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0014	2309	2	0	0	2	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0015	2310	1	0	0	0	0	1	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0016	2310	1	0	0	0	0	1	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0017	2309	1	1	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0018	2311	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0019	2305	1	1	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0020	2310	1	0	1	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0021	2309	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0022	2310	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0023	2312	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0024	2311	1	0	0	0	1	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0025	2312	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	t0026	2310	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF675_chr19_23647801_23692212	0/1	t0001	605	359	75	57	178	10	38	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	t0002	605	8	7	1	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	1/0	t0003	605	5	4	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	t0004	605	2	2	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	t0005	594	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	t0006	605	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF676_chr19_22174089_22201951	0/0	t0001	1180	157	47	24	67	2	17	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0002	1180	139	10	17	88	3	21	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/1	t0003	1180	111	21	23	51	9	6	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0004	1180	13	6	5	0	2	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0005	1180	10	10	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0006	1180	4	0	0	4	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0007	1178	3	0	3	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	t0008	1180	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951