Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF718_chr4_119501_169162	0/0	t0013	2200	3	1	1	0	0	1	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0014	2211	2	2	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0015	2211	2	0	2	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0016	2211	2	2	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0017	2211	2	2	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0018	2211	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0019	2211	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0020	2212	1	0	0	0	0	1	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0021	2212	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0022	2211	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0023	2211	1	0	0	0	0	1	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0024	2211	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0025	2212	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0026	2211	1	0	0	1	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	t0027	2209	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF71_chr19_56590302_56629486	0/0	t0001	1909	156	8	22	113	1	12	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	1/0	t0002	1909	92	16	17	39	5	14	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0003	1909	56	17	19	8	2	10	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/1	t0004	1909	46	4	7	25	4	5	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0005	1909	13	6	2	0	2	3	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0006	1909	11	11	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0007	1909	11	0	0	10	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0008	1909	8	8	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0009	1909	5	5	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0010	1909	5	5	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0011	1909	4	0	4	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0012	1909	3	3	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0013	1909	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0014	1900	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0015	1909	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0016	1909	2	0	2	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0017	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0018	1909	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0019	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0020	1909	1	0	0	0	0	1	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0021	1909	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0022	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0023	1909	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0024	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0025	1900	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0026	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0027	1909	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0028	1909	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0029	1909	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	t0030	1909	1	1	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF721_chr4_434988_504156	1/0	t0001	1902	116	13	26	62	4	10	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0002	1899	56	25	7	21	1	2	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0003	1902	54	2	9	30	3	10	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	t0004	1902	24	22	0	0	0	2	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/1	t0005	1901	20	1	7	6	3	2	copy fasta	ZNF721	chr4	434988	504156