Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF774_chr15_90347284_90367847	0/0	t0047	1704	1	0	0	0	0	1	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	t0048	1710	1	0	0	1	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	t0049	1714	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	t0050	1704	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF775_chr7_150374330_150403630	1/0	t0001	648	223	60	49	74	9	30	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/1	t0002	648	163	24	23	94	5	16	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	t0003	648	10	8	2	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	t0004	648	1	1	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	t0005	648	1	1	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF776_chr19_57741815_57763148	0/1	t0001	3704	126	3	28	71	11	12	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	1/0	t0002	3706	104	5	26	52	2	18	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0003	3704	66	6	13	33	4	10	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0004	3705	39	27	1	10	1	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0005	3704	14	1	3	10	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0006	3705	12	12	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0007	3704	8	7	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0008	3705	6	6	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0009	3704	5	3	1	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0010	3706	5	3	2	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0011	3705	3	3	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0012	3704	2	2	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0013	3705	2	2	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0014	3705	2	2	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0015	3705	2	0	2	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0016	3705	2	1	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0017	3705	2	1	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0018	3706	2	0	0	0	0	2	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0019	3706	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0020	3706	1	0	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0021	3706	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0022	3706	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0023	3705	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0024	3705	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0025	3706	1	0	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0026	3706	1	0	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0027	3706	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0028	3704	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0029	3704	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0030	3704	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0031	3704	1	1	0	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0032	3704	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0033	3705	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	t0034	3704	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF777_chr7_149426363_149466062	0/1	t0001	677	368	83	56	174	13	41	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	1/0	t0002	677	62	8	19	22	5	7	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	t0003	687	4	4	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	t0004	677	1	0	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	t0005	677	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF778_chr16_89212703_89242141	0/0	t0001	8825	68	9	26	24	4	5	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	t0002	8825	30	0	2	25	1	2	copy fasta	ZNF778	chr16	89212703	89242141