Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF783_chr7_149257196_149289988	0/0	t0005	2805	17	11	5	0	1	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0006	2790	13	0	0	13	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0007	2791	13	7	4	0	2	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0008	2801	11	8	3	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0009	2790	9	1	0	8	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0010	2792	9	0	2	7	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0011	2783	4	4	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0012	2790	3	0	0	0	1	2	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0013	2790	3	3	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0014	2789	2	0	2	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0015	2784	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0016	2791	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0017	2801	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0018	2805	2	1	0	0	1	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0019	2790	2	0	0	2	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0020	2784	2	0	0	2	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0021	2805	2	1	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0022	2791	2	0	2	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0023	2790	2	1	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0024	2783	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0025	2790	1	0	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0026	2791	1	0	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0027	2784	1	0	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0028	2784	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0029	2784	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0030	2784	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0031	2799	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/1	t0032	2784	1	0	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0033	2804	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0034	2790	1	0	0	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0035	2790	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0036	2791	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0037	2792	1	0	0	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0038	2791	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0039	2791	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0040	2790	1	0	0	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0041	2791	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0042	2784	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0043	2784	1	0	0	0	0	1	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	t0044	2791	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF784_chr19_55615741_55629566	1/1	t0001	1016	250	51	58	98	10	31	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0002	1016	79	11	21	36	1	10	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0003	1016	16	7	4	1	3	1	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0004	1016	10	10	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0005	1016	7	6	1	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0006	1016	6	0	0	6	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0007	1016	4	0	0	4	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0008	1011	4	4	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0009	1016	2	2	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0010	1016	2	2	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566