Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF784_chr19_55615741_55629566	0/0	t0011	1016	2	2	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0012	1016	1	0	0	1	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0013	1016	1	0	0	1	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0014	1016	1	0	0	1	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0015	1016	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0016	1016	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	t0017	1016	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF785_chr16_30575656_30590697	1/1	t0001	1991	110	14	28	52	7	7	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0002	1990	45	0	9	19	3	14	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0003	1992	30	0	9	16	2	3	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0004	1990	25	18	4	0	1	2	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0005	1990	20	18	0	0	1	1	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0006	1991	16	0	2	10	0	4	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0007	1991	10	10	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0008	1992	8	0	3	5	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0009	1989	6	6	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0010	1990	5	4	1	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0011	1993	5	0	0	4	0	1	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0012	1990	4	3	1	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0013	1992	4	4	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0014	1991	4	0	1	2	0	1	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0015	1990	3	3	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0016	1990	3	1	1	1	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0017	1991	3	0	0	3	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0018	1991	3	3	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0019	1992	2	0	2	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0020	1991	2	2	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0021	1991	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0022	1990	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0023	1991	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0024	1991	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0025	1992	1	0	1	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0026	1992	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0027	1992	1	0	0	0	0	1	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0028	1991	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0029	1990	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	t0030	1988	1	1	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF786_chr7_149064641_149095718	1/1	t0001	861	254	82	48	85	13	24	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0002	862	9	6	2	1	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0003	861	7	7	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0004	861	5	0	0	5	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0005	861	2	1	1	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0006	861	1	0	1	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0007	861	1	0	0	1	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	t0008	783	1	0	0	0	1	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF787_chr19_56082366_56126295	1/0	t0001	792	58	8	11	37	0	1	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0002	793	54	3	10	37	0	4	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/1	t0003	790	49	9	8	15	5	11	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0004	790	33	4	6	17	0	6	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	t0005	791	21	1	10	7	1	2	copy fasta	ZNF787	chr19	56082366	56126295