Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF814_chr19_57864381_57894037	0/0	t0045	3675	1	0	0	0	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0046	3675	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0047	3675	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0048	3675	1	0	0	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0049	3689	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0050	3675	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0051	3678	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0052	3680	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0053	3677	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0054	3680	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0055	3680	1	0	1	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0056	3678	1	0	0	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0057	3679	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0058	3675	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0059	3689	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0060	3689	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0061	3690	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	t0062	3674	1	1	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF816_chr19_52944385_52967881	1/1	t0001	605	242	31	40	134	9	26	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0002	605	152	58	18	71	3	2	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0003	605	31	0	9	2	6	14	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0004	605	6	5	1	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0005	605	5	0	0	5	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0006	605	2	0	0	2	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0007	605	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0008	605	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0009	605	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	t0010	605	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF81_chrX_47831902_47930627	0/1	t0001	9245	121	21	17	66	3	13	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	1/0	t0002	9245	40	8	10	5	4	12	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0003	9245	16	0	1	15	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0004	9245	13	10	3	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0005	9245	7	7	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0006	9245	4	0	4	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0007	9245	3	3	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0008	9245	3	3	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0009	9242	3	3	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0010	9245	3	2	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0011	9245	2	2	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0012	9245	2	0	1	0	0	1	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0013	9245	2	2	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0014	9245	2	2	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0015	9245	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0016	9245	1	0	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0017	9245	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0018	9245	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0019	9245	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	t0020	9245	1	1	0	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF821_chr16_71854685_71889182	1/1	t0001	749	374	80	78	156	10	48	copy fasta	ZNF821	chr16	71854685	71889182
ZNF821_chr16_71854685_71889182	0/0	t0002	749	2	2	0	0	0	0	copy fasta	ZNF821	chr16	71854685	71889182