Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF823_chr19_11716265_11743946	0/1	t0001	564	234	52	42	104	8	27	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	1/0	t0002	564	173	35	36	79	6	16	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	t0003	564	9	0	6	0	2	1	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	t0004	564	5	0	0	5	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	t0005	564	1	1	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF827_chr4_145752627_145943823	0/0	t0001	4405	86	14	16	37	11	8	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/1	t0002	4404	34	13	5	8	0	7	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0003	4400	25	4	3	10	2	6	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0004	4399	13	6	2	3	0	2	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	1/0	t0005	4406	8	2	1	4	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0006	4408	7	0	0	7	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0007	4404	7	6	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0008	4404	7	5	2	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0009	4405	6	6	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0010	4405	6	3	1	0	1	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0011	4405	6	2	1	3	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0012	4404	6	4	1	0	0	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0013	4406	5	0	2	3	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0014	4405	5	0	2	3	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0015	4401	4	2	2	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0016	4406	3	3	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0017	4405	2	0	2	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0018	4411	2	2	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0019	4405	2	2	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0020	4400	2	2	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0021	4404	2	2	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0022	4410	2	2	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0023	4400	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0024	4405	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0025	4406	1	0	0	0	0	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0026	4406	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0027	4425	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0028	4399	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0029	4405	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0030	4405	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0031	4411	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0032	4404	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0033	4404	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0034	4399	1	1	0	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0035	4398	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	t0036	4404	1	0	0	1	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF829_chr19_36883124_36921291	0/0	t0001	3733	111	6	21	67	7	10	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0002	3728	68	21	3	36	1	7	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/1	t0003	3734	36	6	17	5	3	4	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	1/0	t0004	3734	35	11	10	7	2	4	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0005	3734	34	11	7	12	1	3	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0006	3733	8	0	4	3	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0007	3730	7	7	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0008	3731	7	7	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	t0009	3734	6	6	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291