Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF83_chr19_52607377_52643355	0/0	t0001	1003	158	28	27	93	4	6	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	1/1	t0002	1003	124	16	31	45	5	25	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0003	1003	70	7	5	45	3	10	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0004	1003	37	17	10	2	2	6	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0005	1003	29	12	0	17	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0006	1003	16	13	3	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0007	1003	7	1	3	0	2	1	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0008	1003	6	0	0	6	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0009	1003	3	3	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0010	1003	2	0	0	2	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0011	1003	2	1	1	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0012	1003	2	0	1	0	0	1	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0013	1003	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0014	1003	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0015	1003	1	0	0	0	0	1	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	t0016	1003	1	0	1	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF841_chr19_52059465_52100765	1/1	t0001	1103	260	52	40	120	15	31	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0002	1103	85	33	16	24	1	11	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0003	1103	9	0	0	9	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0004	1103	4	0	0	4	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0005	1103	3	0	2	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0006	1103	2	1	1	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0007	1103	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0008	1103	1	0	1	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0009	1103	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0010	1103	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	t0011	1103	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF843_chr16_31430434_31447789	1/1	t0001	859	404	87	69	189	16	41	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	t0002	859	7	7	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	t0003	859	1	0	0	0	0	1	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	t0004	859	1	0	0	1	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	t0005	859	1	0	1	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF844_chr19_12059731_12086565	0/0	t0001	4588	80	0	25	39	4	12	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0002	4588	48	4	5	31	3	5	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0003	4588	41	7	12	8	5	9	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0004	4588	40	16	5	16	0	3	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0005	4590	31	28	2	0	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0006	4588	9	9	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0007	4589	5	0	1	1	0	3	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0008	4588	5	0	0	5	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0009	4591	5	0	4	0	1	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0010	4588	4	0	0	4	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0011	4587	4	3	1	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0012	4588	4	0	4	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0013	4591	4	0	0	4	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0014	4590	4	1	0	3	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0015	4588	4	4	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0016	4588	3	3	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0017	4589	3	0	0	2	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	t0018	4591	3	3	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565