Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF853_chr7_6610610_6629290	0/0	t0020	1885	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0021	1885	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0022	1885	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0023	1885	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0024	1885	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0025	1885	1	0	0	0	0	1	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	t0026	1885	1	0	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF85_chr19_20918251_20955697	0/1	t0001	546	294	56	54	137	11	35	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0002	542	50	16	8	23	1	2	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0003	545	17	3	3	2	2	7	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0004	543	7	3	0	4	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0005	545	5	5	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0006	546	4	4	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0007	543	4	0	0	4	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0008	545	1	1	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	t0009	546	1	0	1	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF860_chr3_31976750_31996723	0/0	t0001	1319	134	49	21	47	6	11	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	1/1	t0002	1319	128	21	30	47	8	20	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0003	1319	68	1	7	53	0	7	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0004	1319	27	0	4	22	0	1	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0005	1317	19	0	0	19	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0006	1319	10	8	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0007	1319	4	2	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0008	1319	4	4	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0009	1319	3	0	0	3	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0010	1318	2	2	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0011	1319	2	0	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0012	1319	2	0	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0013	1319	2	1	1	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0014	1319	2	0	0	2	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0015	1319	1	0	0	0	0	1	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0016	1319	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0017	1319	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0018	1318	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0019	1319	1	0	1	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0020	1319	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	t0021	1319	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF862_chr7_149833375_149872479	1/0	t0001	3433	81	7	19	35	5	14	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/1	t0002	3347	70	12	14	26	6	11	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0003	3433	66	0	11	50	2	3	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0004	3347	44	15	8	15	1	5	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0005	3349	32	0	6	26	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0006	3431	13	12	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0007	3431	13	2	0	10	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0008	3349	8	8	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0009	3431	8	7	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0010	3433	6	0	6	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0011	3431	6	6	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0012	3349	5	4	1	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	t0013	3431	4	4	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479