Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF875_chr19_37329649_37369447	0/0	t0006	863	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	t0007	863	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF878_chr19_12038805_12057961	1/1	t0001	161	345	98	58	131	14	42	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	t0002	161	1	0	0	1	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF879_chr5_179018804_179040064	0/0	t0001	1562	140	22	29	75	5	9	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	1/1	t0002	1561	117	41	25	30	6	13	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0003	1558	94	0	19	54	3	18	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0004	1559	42	2	2	31	1	6	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0005	1558	21	0	0	21	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0006	1562	8	6	1	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0007	1563	7	3	0	4	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0008	1529	4	4	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0009	1557	3	0	1	0	1	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0010	1561	3	2	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0011	1561	2	2	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0012	1562	2	2	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0013	1557	2	2	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0014	1561	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0015	1561	1	0	1	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0016	1563	1	0	1	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0017	1562	1	0	0	0	0	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0018	1561	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0019	1562	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0020	1562	1	0	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0021	1561	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0022	1556	1	0	1	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0023	1561	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	t0024	1563	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF880_chr19_52364923_52390795	0/0	t0001	525	174	33	32	80	5	24	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	1/0	t0002	525	161	15	26	98	8	13	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/1	t0003	292	81	21	10	41	5	3	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	t0004	525	31	16	11	0	0	4	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	t0005	525	7	0	6	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	t0006	525	2	2	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	t0007	525	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	t0008	290	1	0	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF883_chr9_112983129_113017192	0/0	t0001	10227	38	3	5	25	2	3	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	1/0	t0002	10231	29	5	7	9	1	6	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0003	10220	29	0	1	27	0	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0004	10219	27	0	8	16	1	2	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0005	10230	22	2	4	11	3	2	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0006	10222	19	0	2	15	1	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0007	10228	19	2	2	9	0	6	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0008	10222	13	0	1	8	0	4	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0009	10227	13	0	1	10	1	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0010	10227	10	7	3	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0011	10222	9	8	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0012	10227	9	6	3	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0013	10219	8	0	2	4	1	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0014	10232	8	1	5	0	0	2	copy fasta	ZNF883	chr9	112983129	113017192