Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF883_chr9_112983129_113017192	0/0	t0115	10228	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0116	10228	1	0	0	0	0	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0117	10228	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0118	10228	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0119	10228	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0120	10228	1	0	1	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0121	10228	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0122	10228	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0123	10228	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0124	10228	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0125	10228	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0126	10233	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0127	10229	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0128	10229	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	t0129	10229	1	0	0	0	0	1	copy fasta	ZNF883	chr9	112983129	113017192
ZNF888_chr19_52899415_52928428	0/1	t0001	1988	101	11	26	42	11	10	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	1/0	t0002	1988	65	3	13	41	3	4	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0003	1990	61	1	8	46	0	6	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0004	1991	32	18	4	7	1	2	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0005	1988	31	2	6	15	2	6	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0006	1990	24	0	15	0	1	8	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0007	1988	21	1	0	12	0	8	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0008	1990	13	8	5	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0009	1992	9	9	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0010	1990	7	6	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0011	1990	7	7	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0012	1990	6	0	0	5	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0013	1991	6	3	0	3	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0014	1990	4	4	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0015	1992	4	4	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0016	1991	4	4	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0017	1991	3	3	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0018	1988	2	0	2	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0019	1990	2	1	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0020	1992	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0021	1988	2	1	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0022	1990	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0023	1990	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0024	1988	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0025	1990	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0026	1992	1	0	0	1	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0027	1990	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0028	1992	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0029	1991	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0030	1991	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0031	1990	1	0	0	1	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0032	1988	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0033	1992	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0034	1990	1	0	0	1	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	t0035	1990	1	0	0	1	0	0	copy fasta	ZNF888	chr19	52899415	52928428