Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF891_chr12_133099779_133135274	0/0	t0048	15660	2	2	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0049	15670	2	2	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0050	15665	2	0	0	0	0	2	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0051	15660	1	0	0	0	1	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0052	15659	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0053	15656	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0054	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0055	15610	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0056	15608	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0057	15647	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0058	15658	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0059	15657	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0060	15654	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0061	15659	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0062	15657	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0063	15665	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0064	15658	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0065	15681	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0066	15677	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0067	15677	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0068	15651	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0069	15675	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0070	15678	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0071	15678	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0072	15679	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0073	15682	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0074	15685	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0075	15683	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0076	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0077	15660	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0078	15660	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0079	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0080	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0081	15658	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0082	15659	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0083	15659	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0084	15660	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0085	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0086	15662	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0087	15660	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0088	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0089	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0090	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0091	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0092	15660	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0093	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0094	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0095	15660	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0096	15659	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0097	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274