Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF891_chr12_133099779_133135274	0/0	t0098	15661	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0099	15661	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0100	15661	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0101	15661	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0102	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0103	15660	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0104	15659	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0105	15659	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0106	15660	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0107	15676	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0108	15671	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0109	15671	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0110	15673	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0111	15683	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0112	15685	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0113	15658	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0114	15668	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0115	15668	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0116	15669	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0117	15654	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0118	15654	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0119	15654	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0120	15665	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0121	15665	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0122	15662	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0123	15665	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0124	15665	1	0	0	1	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0125	15662	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0126	15662	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0127	15665	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0128	15665	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0129	15666	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0130	15587	1	1	0	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	t0131	15587	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF892_chr2_95202521_95228839	0/0	t0001	8532	152	27	31	65	6	23	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0002	8532	53	15	12	18	2	6	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0003	8532	21	0	0	21	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0004	8532	12	0	1	10	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0005	8532	10	10	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0006	8532	9	9	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0007	8532	7	0	0	7	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0008	8532	6	0	0	6	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0009	8532	5	4	1	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0010	8532	5	0	0	5	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0011	8532	3	0	0	0	0	3	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0012	8532	3	2	1	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0013	8532	3	0	3	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0014	8532	3	0	3	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0015	8532	2	0	0	0	0	2	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0016	8532	2	0	0	2	0	0	copy fasta	ZNF892	chr2	95202521	95228839