Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF892_chr2_95202521_95228839	0/0	t0017	8532	2	0	2	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0018	8532	2	0	0	1	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0019	8532	2	0	1	0	1	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0020	8532	2	2	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0021	8532	2	0	0	0	0	2	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0022	8532	2	0	0	2	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0023	8532	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0024	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0025	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	1/0	t0026	8532	1	0	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0027	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0028	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0029	8532	1	0	1	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0030	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0031	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0032	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0033	8532	1	0	0	1	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0034	8499	1	0	0	1	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0035	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0036	8532	1	0	0	1	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0037	8532	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0038	8532	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0039	8532	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0040	8532	1	0	1	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0041	8532	1	0	0	0	1	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0042	8543	1	0	0	1	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0043	8532	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0044	8532	1	0	1	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/1	t0045	8532	1	0	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	t0046	8532	1	0	0	1	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF8_chr19_58273955_58307791	0/0	t0001	7383	103	5	13	71	5	9	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0002	7382	45	3	16	21	0	5	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0003	7383	44	0	0	39	0	5	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0004	7382	17	0	4	5	0	8	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0005	7382	17	3	4	0	6	4	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	1/0	t0006	7383	16	0	0	15	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0007	7382	12	12	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0008	7382	12	2	6	2	1	1	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0009	7383	7	1	6	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0010	7398	6	6	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0011	7383	6	4	2	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0012	7383	5	2	1	1	1	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0013	7381	5	5	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0014	7383	5	0	4	0	0	1	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0015	7383	4	0	0	4	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0016	7398	4	4	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0017	7383	4	0	3	0	1	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0018	7384	4	0	4	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	t0019	7382	4	4	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/1	t0020	7383	3	0	2	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791