Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF99_chr19_22747183_22789151	0/0	t0038	5267	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0039	5268	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0040	5267	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0041	5267	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0042	5183	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0043	5184	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0044	5183	1	0	1	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0045	5184	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	t0046	5184	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNFX1_chr20_49240900_49283057	0/0	t0001	1451	172	13	36	90	9	24	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	1/0	t0002	1453	79	2	18	44	0	14	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0003	1452	55	29	5	16	1	4	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/1	t0004	1451	55	17	10	17	4	6	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0005	1453	27	24	3	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0006	1453	4	4	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0007	1452	2	0	2	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0008	1453	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0009	1452	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0010	1451	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	t0011	1451	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNG1A_chr9_115837_184056	1/0	t0001	718	199	43	31	95	7	22	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/1	t0002	718	99	10	18	56	3	11	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0003	718	70	18	26	17	1	8	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0004	718	9	8	1	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0005	718	4	0	2	0	1	1	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0006	718	4	4	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0007	718	2	2	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0008	718	2	0	2	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0009	718	1	1	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0010	718	1	1	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0011	718	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0012	718	1	1	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	t0013	718	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1B_chr2_113432691_113501204	1/1	t0001	640	173	70	34	41	6	20	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0002	640	88	10	21	45	3	9	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0003	641	3	0	0	0	0	3	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0004	640	3	0	0	0	1	2	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0005	639	3	0	0	3	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0006	639	3	1	0	2	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0007	640	1	0	1	0	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0008	640	1	0	0	1	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	t0009	640	1	1	0	0	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1C_chr9_68236983_68305035	0/0	t0001	498	306	73	59	136	16	22	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0002	498	10	0	0	10	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0003	498	2	2	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0004	498	1	1	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0005	498	1	0	1	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0006	498	1	0	0	1	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	t0007	498	1	0	0	1	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1E_chr9_65670928_65739041	0/0	t0001	475	87	22	15	38	5	7	copy fasta	ZNG1E	chr9	65670928	65739041