Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNG1E_chr9_65670928_65739041	0/0	t0002	475	68	7	16	35	3	7	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	t0003	475	38	6	6	23	1	2	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	t0004	475	7	0	2	4	1	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	t0005	475	1	1	0	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	t0006	475	1	0	1	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1F_chr9_41126309_41194317	0/1	t0001	485	282	62	53	127	6	33	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	1/0	t0002	485	13	11	1	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	t0003	485	3	0	2	0	0	1	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	t0004	485	2	1	1	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	t0005	485	2	0	1	1	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	t0006	485	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	t0007	485	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNHIT1_chr7_101213165_101229190	1/1	t0001	264	294	63	41	145	13	30	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0002	264	69	9	8	35	1	16	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0003	264	16	9	3	0	4	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0004	264	9	9	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0005	264	2	2	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0006	264	1	1	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	t0007	264	1	1	0	0	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT2_chr11_65111403_65122701	1/1	t0001	88	371	93	67	155	14	40	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	t0002	88	6	0	0	6	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	t0003	88	4	3	1	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	t0004	88	2	0	0	0	2	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	t0005	88	1	0	0	1	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT3_chr17_36481681_36500822	0/1	t0001	438	368	79	68	164	15	41	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0002	438	9	3	0	5	0	1	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0003	438	3	0	0	3	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0004	438	2	2	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0005	438	2	2	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0006	438	1	1	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0007	438	1	0	0	0	1	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	t0008	438	1	1	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT6_chr1_85644417_85713433	0/1	t0001	4791	91	5	20	50	2	13	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0002	4791	64	4	22	30	4	4	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	1/0	t0003	4791	64	40	6	13	1	3	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0004	4790	37	0	1	31	3	2	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0005	4791	16	0	8	7	0	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0006	4791	14	2	1	9	0	2	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0007	4788	7	0	0	7	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0008	4791	7	6	1	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0009	4791	7	7	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0010	4791	6	6	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0011	4780	5	0	3	0	0	2	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0012	4792	5	0	0	5	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0013	4791	4	4	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0014	4791	4	0	2	0	1	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0015	4791	3	0	0	3	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0016	4792	3	1	0	1	0	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0017	4791	2	0	0	2	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	t0018	4790	2	2	0	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433