Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN22_chr19_58321994_58347332	0/0	t0033	3180	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0034	3182	1	0	0	0	0	1	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0035	3181	1	0	0	0	0	1	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	t0036	3180	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN23_chr6_28427655_28448491	0/0	t0001	1980	156	16	22	86	6	26	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0002	1980	89	28	9	48	0	4	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0003	1980	69	23	13	31	0	2	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0004	1980	57	6	10	36	1	4	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/1	t0005	1980	37	13	8	5	5	5	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0006	1980	8	0	8	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0007	1980	5	5	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	1/0	t0008	1981	3	0	1	0	1	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0009	1980	2	2	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0010	1980	2	1	0	0	0	1	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0011	1980	2	0	1	0	1	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0012	1980	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0013	1980	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0014	1980	1	0	1	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	t0015	1980	1	0	1	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN25_chr7_99611946_99637408	1/0	t0001	2718	174	15	42	91	9	16	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0002	2719	70	5	4	46	1	14	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0003	2718	25	16	0	6	1	2	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0004	2718	21	19	2	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0005	2702	14	10	4	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0006	2714	10	10	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0007	2718	6	6	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0008	2718	5	0	0	5	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0009	2718	5	5	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0010	2719	4	0	0	4	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/1	t0011	2718	3	0	0	0	2	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0012	2715	3	3	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0013	2718	2	0	0	0	0	2	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0014	2718	2	2	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0015	2718	2	2	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0016	2718	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0017	2719	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0018	2714	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0019	2718	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0020	2718	1	0	0	0	0	1	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0021	2718	1	0	0	0	1	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0022	2718	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0023	2718	1	1	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0024	2718	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0025	2718	1	0	0	0	0	1	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0026	2714	1	1	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0027	2718	1	1	0	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0028	2718	1	0	1	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0029	2719	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0030	2718	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	t0031	2719	1	0	1	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408