Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSCAN9_chr6_28220275_28238487	1/0	t0002	475	125	3	29	60	8	24	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0003	475	88	19	9	56	1	3	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0004	475	6	1	4	0	1	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0005	475	3	3	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0006	475	1	0	1	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0007	475	1	0	0	1	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	t0008	475	1	1	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSWIM1_chr20_45876227_45890266	0/0	t0001	1309	76	7	14	54	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	1/0	t0002	1312	50	11	6	19	3	10	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0003	1311	42	7	17	7	5	6	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0004	1310	38	8	6	15	5	4	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0005	1309	25	1	0	23	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0006	1312	20	8	4	7	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0007	1311	10	0	0	9	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0008	1315	8	7	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0009	1316	7	0	0	7	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0010	1313	7	1	5	0	1	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/1	t0011	1307	7	0	1	3	0	2	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0012	1314	6	0	0	4	0	2	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0013	1311	6	0	2	4	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0014	1308	5	0	1	4	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0015	1319	4	4	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0016	1308	4	1	0	3	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0017	1310	4	0	0	3	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0018	1322	3	3	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0019	1321	3	3	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0020	1314	3	3	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0021	1314	3	1	0	2	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0022	1313	3	2	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0023	1310	3	0	2	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0024	1311	3	0	0	3	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0025	1313	3	3	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0026	1301	3	0	0	3	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0027	1317	2	2	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0028	1317	2	0	0	0	0	2	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0029	1318	2	0	0	2	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0030	1312	2	2	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0031	1313	2	2	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0032	1314	2	0	0	2	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0033	1308	2	0	0	2	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0034	1310	2	1	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0035	1327	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0036	1328	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0037	1324	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0038	1325	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0039	1323	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0040	1324	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0041	1320	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0042	1321	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0043	1318	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266