Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSWIM1_chr20_45876227_45890266	0/0	t0044	1319	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0045	1319	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0046	1320	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0047	1316	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0048	1316	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0049	1317	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0050	1315	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0051	1315	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0052	1315	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0053	1315	1	0	0	0	1	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0054	1316	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0055	1316	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0056	1317	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0057	1301	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0058	1312	1	0	0	0	1	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0059	1312	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0060	1313	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0061	1315	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0062	1310	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0063	1310	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0064	1310	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0065	1310	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0066	1310	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0067	1312	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0068	1313	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0069	1308	1	0	0	1	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0070	1309	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0071	1306	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0072	1306	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0073	1308	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0074	1307	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0075	1302	1	0	0	0	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	t0076	1301	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM2_chr2_186822475_186854170	1/1	t0001	550	187	40	38	83	6	18	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0002	551	69	5	19	27	6	12	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0003	550	48	27	7	9	2	3	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0004	550	8	8	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0005	550	4	4	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0006	550	3	2	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0007	550	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0008	550	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0009	551	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0010	550	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0011	550	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0012	551	1	0	0	0	0	1	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	t0013	551	1	0	0	1	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM3_chr20_45852614_45884122	1/1	t0001	686	295	79	51	126	10	27	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	t0002	686	50	11	4	28	0	7	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	t0003	686	31	0	1	28	0	2	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	t0004	686	3	3	0	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122