Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSWIM3_chr20_45852614_45884122	0/0	t0005	686	3	3	0	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	t0006	686	2	0	0	2	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	t0007	686	2	2	0	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM4_chr19_13790443_13837254	1/0	t0001	1411	107	11	22	60	2	11	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0002	1411	86	23	23	31	3	6	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0003	1412	43	7	8	16	6	6	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0004	1413	24	1	1	10	1	11	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0005	1410	18	5	4	7	0	2	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/1	t0006	1412	13	2	6	4	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0007	1410	8	4	0	3	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0008	1415	7	6	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0009	1413	6	6	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0010	1419	5	5	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0011	1418	4	4	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0012	1411	3	3	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0013	1412	3	0	1	0	0	2	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0014	1411	2	0	0	2	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0015	1412	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0016	1411	2	0	0	2	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0017	1418	2	0	0	2	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0018	1410	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0019	1411	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0020	1411	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0021	1410	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0022	1411	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0023	1411	1	0	1	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0024	1410	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0025	1415	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0026	1411	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0027	1413	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0028	1420	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0029	1417	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0030	1413	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0031	1418	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0032	1410	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0033	1411	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0034	1410	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	t0035	1426	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM5_chr1_45011399_45211605	1/0	t0001	2311	149	44	29	50	11	14	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0002	2312	22	0	5	15	1	1	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0003	2310	21	4	10	6	0	1	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0004	2311	18	17	1	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0005	2311	5	0	0	5	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0006	2311	4	4	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0007	2311	3	0	3	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0008	2311	2	0	0	2	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0009	2310	2	0	2	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0010	2311	2	1	1	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0011	2311	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0012	2311	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605