Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZSWIM5_chr1_45011399_45211605	0/0	t0013	2311	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0014	2312	1	0	1	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	t0015	2310	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/1	t0016	2311	1	0	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM6_chr5_61327258_61551172	0/0	t0001	1872	143	73	35	15	7	13	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	1/1	t0002	1871	93	9	20	41	6	15	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0003	1873	31	0	1	22	1	7	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0004	1873	2	0	0	2	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0005	1872	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0006	1873	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0007	1873	1	0	0	0	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0008	1872	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0009	1828	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0010	1872	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	t0011	1872	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM7_chr17_15971560_16004704	1/1	t0001	1598	141	15	24	75	5	20	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0002	1598	115	28	32	36	6	13	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0003	1598	26	11	1	11	0	3	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0004	1597	21	5	5	6	1	4	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0005	1598	12	11	1	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0006	1598	12	12	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0007	1599	2	1	1	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0008	1597	2	2	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0009	1598	2	2	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0010	1598	2	2	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0011	1598	1	0	0	1	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0012	1597	1	1	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0013	1598	1	1	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0014	1598	1	0	0	1	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0015	1598	1	1	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0016	1599	1	0	0	1	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0017	1598	1	1	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0018	1599	1	1	0	0	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	t0019	1598	1	0	0	1	0	0	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM8_chr10_73780606_73806793	1/1	t0001	548	314	80	54	128	12	38	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM9_chr19_48165680_48202620	1/1	t0001	838	366	73	78	160	12	41	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0002	838	8	8	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0003	838	4	4	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0004	838	4	4	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0005	838	2	2	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0006	838	1	0	0	0	0	1	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0007	838	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0008	838	1	1	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	t0009	838	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZUP1_chr6_116630618_116673766	1/1	t0001	431	366	82	57	167	18	40	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	t0002	431	11	6	0	1	0	4	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	t0003	431	1	0	1	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZW10_chr11_113728187_113778692	1/1	t0001	534	366	79	66	170	12	37	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0002	530	33	3	2	24	0	4	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0003	534	7	7	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692