Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZW10_chr11_113728187_113778692	0/0	t0004	533	3	0	0	3	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0005	534	2	0	2	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0006	534	1	0	0	1	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0007	534	1	0	0	0	0	1	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	t0008	534	1	1	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZWILCH_chr15_66500326_66555130	1/1	t0001	1820	359	75	62	171	10	39	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0002	1820	21	5	1	11	1	3	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0003	1820	8	1	2	0	3	2	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0004	1820	7	5	2	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0005	1820	5	1	3	0	0	1	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0006	1820	3	3	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0007	1820	2	0	0	2	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0008	1820	2	2	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0009	1820	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0010	1820	1	0	0	0	0	1	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	t0011	1820	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWINT_chr10_56352227_56366259	1/1	t0001	1024	285	51	47	155	8	22	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0002	1025	70	4	11	46	1	8	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0003	1024	67	31	20	1	5	10	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0004	1024	5	5	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0005	1024	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0006	1025	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0007	1024	2	0	0	2	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0008	1024	2	0	0	2	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0009	1024	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0010	1024	1	0	0	1	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	t0011	1024	1	0	0	1	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZXDA_chrX_57900430_57915458	1/0	t0001	2630	158	35	25	71	7	19	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/1	t0002	2632	76	11	19	35	2	8	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0003	2632	30	0	3	24	0	3	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0004	2636	17	15	2	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0005	2633	4	4	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0006	2631	4	2	2	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0007	2631	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0008	2632	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0009	2630	3	2	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0010	2631	3	0	0	3	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0011	2634	3	2	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0012	2630	2	2	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0013	2631	2	2	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0014	2632	1	0	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0015	2632	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0016	2637	1	0	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0017	2630	1	0	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0018	2632	1	0	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0019	2631	1	0	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0020	2628	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0021	2632	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0022	2634	1	0	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	t0023	2638	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458