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geneid	100287178
ensemblid	ENSG00000233136.3
hgncid	44439
symbol	USP17L11
name	ubiquitin specific peptidase 17 like family member 11
refseq_nuc	NM_001256854.1
refseq_prot	NP_001243783.1
ensembl_nuc	ENST00000457736.1
ensembl_prot	ENSP00000400880.1
mane_status	MANE Select
chr	chr4
start	9215405
end	9216997
strand	+
ver	v1.2
region	chr4:9215405-9216997
region5000	chr4:9210405-9221997
regionname0	USP17L11_chr4_9215405_9216997
regionname5000	USP17L11_chr4_9210405_9221997

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	413	2	0	2	0	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997
c0002	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	2	0	2	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	chr4	9210405	9221997

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997
a0001c0002	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0000	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997
a0001c0002t0000	0/0	1593	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	copy fasta	chr4	9210405	9221997

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0000g0000	0/0	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	chr4	9210405	9221997
a0001c0002t0000g0000	0/0	1	0	1	0	0	0	USP17L11_chr4_9210405_9221997	USP17L11	chr4	9210405	9221997

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG01978	hp1	a0001	c0001	t0000	g0000	AMR	PEL	USP17L11_chr4_9210405_9221997	USP17L11	chr4	9210405	9221997
HG01978	hp2	a0001	c0002	t0000	g0000	AMR	PEL	USP17L11_chr4_9210405_9221997	USP17L11	chr4	9210405	9221997

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr4:9215413	C C	G G	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.9C>G c.9C>G	p.Asp3Glu p.Asp3Glu	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	9/1593	9/1593	3/530			chr4	9215413
chr4:9215478	C C	T T	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.74C>T c.74C>T	p.Pro25Leu p.Pro25Leu	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	74/1593	74/1593	25/530			chr4	9215478
chr4:9215571	C C	T T	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.167C>T c.167C>T	p.Ala56Val p.Ala56Val	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	167/1593	167/1593	56/530			chr4	9215571
chr4:9215577	T T	A A	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.173T>A c.173T>A	p.Val58Glu p.Val58Glu	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	173/1593	173/1593	58/530			chr4	9215577
chr4:9215961	A A	C C	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.557A>C c.557A>C	p.His186Pro p.His186Pro	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	557/1593	557/1593	186/530			chr4	9215961
chr4:9216332	A A	C C	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.928A>C c.928A>C	p.Thr310Pro p.Thr310Pro	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	928/1593	928/1593	310/530			chr4	9216332
chr4:9216333	C C	A A	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.929C>A c.929C>A	p.Thr310Lys p.Thr310Lys	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	929/1593	929/1593	310/530			chr4	9216333
chr4:9216612	C C	T T	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.1208C>T c.1208C>T	p.Ala403Val p.Ala403Val	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	1208/1593	1208/1593	403/530			chr4	9216612
chr4:9216646	C C	A A	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	stop_gained	HIGH	c.1242C>A c.1242C>A	p.Cys414* p.Cys414*	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	1242/1593	1242/1593	414/530			chr4	9216646
chr4:9216896	G G	C C	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.1492G>C c.1492G>C	p.Glu498Gln p.Glu498Gln	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	1492/1593	1492/1593	498/530			chr4	9216896
chr4:9216909	C C	A A	1	a0001 a0001	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	missense_variant	MODERATE	c.1505C>A c.1505C>A	p.Thr502Asn p.Thr502Asn	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	1505/1593	1505/1593	502/530			chr4	9216909

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr4:9215431	A A	T T	2	a0001c0001 a0001c0002 a0001c0001 a0001c0002	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.27A>T c.27A>T	p.Gly9Gly p.Gly9Gly	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	27/1593	27/1593	9/530			chr4	9215431
chr4:9215785	G G	T T	2	a0001c0001 a0001c0002 a0001c0001 a0001c0002	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.381G>T c.381G>T	p.Thr127Thr p.Thr127Thr	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	381/1593	381/1593	127/530			chr4	9215785
chr4:9215953	G G	A A	2	a0001c0001 a0001c0002 a0001c0001 a0001c0002	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.549G>A c.549G>A	p.Val183Val p.Val183Val	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	549/1593	549/1593	183/530			chr4	9215953
chr4:9216217	C C	T T	2	a0001c0001 a0001c0002 a0001c0001 a0001c0002	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.813C>T c.813C>T	p.Thr271Thr p.Thr271Thr	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	813/1593	813/1593	271/530			chr4	9216217
chr4:9216349	C C	T T	1	a0001c0002 a0001c0002	1	HG01978.hp2 HG01978.hp2	synonymous_variant	LOW	c.945C>T c.945C>T	p.Leu315Leu p.Leu315Leu	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	945/1593	945/1593	315/530			chr4	9216349
chr4:9216484	T T	A A	2	a0001c0001 a0001c0002 a0001c0001 a0001c0002	2	HG01978.hp1 HG01978.hp2 HG01978.hp1 HG01978.hp2	synonymous_variant	LOW	c.1080T>A c.1080T>A	p.Thr360Thr p.Thr360Thr	USP17L11	ENSG00000233136.3	transcript	ENST00000457736.1	protein_coding	1/1	1080/1593	1080/1593	360/530			chr4	9216484

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos