Joint Open Genome and Omics Platform (JoGo)

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geneid	8243
ensemblid	ENSG00000072501.19
hgncid	11111
symbol	SMC1A
name	structural maintenance of chromosomes 1A
refseq_nuc	NM_006306.4
refseq_prot	NP_006297.2
ensembl_nuc	ENST00000322213.9
ensembl_prot	ENSP00000323421.3
mane_status	MANE Select
chr	chrX
start	53374149
end	53422654
strand	-
ver	v1.2
region	chrX:53374149-53422654
region5000	chrX:53369149-53427654
regionname0	SMC1A_chrX_53374149_53422654
regionname5000	SMC1A_chrX_53369149_53427654

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1233	211	59	34	85	9	22	60	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0002	0/0	1233	1	0	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0003	0/0	883	1	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	3702	206	56	34	83	9	22	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0002	0/0	3702	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0003	0/0	3702	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0004	0/0	3702	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0005	0/0	3700	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0006	0/0	3702	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
c0007	0/0	3702	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	6009	110	36	15	45	1	12	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0002	0/0	6009	65	3	14	35	7	6	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0003	0/0	6009	6	5	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0004	0/0	6009	6	4	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0005	0/0	6009	3	3	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0006	0/0	6009	3	2	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0007	0/0	6009	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0008	0/0	6009	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0009	0/0	6009	2	0	0	0	0	2	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0010	0/0	6009	2	0	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0011	0/0	6009	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0012	0/0	6009	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0013	0/0	6007	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0014	1/0	6009	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0015	0/0	6009	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0016	0/0	6008	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0017	0/0	6009	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0018	0/0	6009	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0019	0/0	6009	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0020	0/0	6010	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0021	0/0	6009	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
t0022	0/0	6009	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	2	1	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0002	0/0	2	0	1	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0003	0/0	2	0	1	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0004	0/0	2	0	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0005	0/0	2	0	0	2	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0006	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0007	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0008	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0009	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0010	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0011	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0012	1/0	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0013	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0014	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0015	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0016	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0017	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0018	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0019	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0020	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0021	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0022	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0023	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0024	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0025	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0026	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0027	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0028	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0029	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0030	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0031	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0032	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0033	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0034	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0035	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0036	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0037	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0038	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0039	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0040	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0041	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0042	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0043	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0044	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0045	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0046	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0047	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0048	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0049	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0050	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0051	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0052	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0053	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0054	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0055	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0056	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0057	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0058	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0059	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0060	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0061	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0062	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0063	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0064	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0065	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0066	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0067	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0068	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0069	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0070	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0071	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0072	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0073	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0074	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0075	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0076	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0077	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0078	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0079	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0080	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0081	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0082	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0083	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0084	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0085	0/1	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0086	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0087	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0088	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0089	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0090	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0091	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0092	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0093	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0094	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0095	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0096	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0097	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0098	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0099	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0100	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0101	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0102	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0103	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0104	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0105	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0106	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0107	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0108	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0109	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0110	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0111	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0112	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0113	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0114	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0115	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0116	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0117	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0118	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0119	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0120	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0121	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0122	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0123	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0124	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0125	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0126	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0127	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0128	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0129	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0130	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0131	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0132	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0133	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0134	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0135	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0136	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0137	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0138	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0139	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0140	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0141	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0142	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0143	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0144	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0145	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0146	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0147	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0148	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0149	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0150	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0151	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0152	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0153	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0154	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0155	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0156	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0157	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0158	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0159	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0160	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0161	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0162	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0163	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0164	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0165	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0166	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0167	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0168	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0169	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0170	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0171	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0172	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0173	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0174	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0175	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0176	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0177	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0178	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0179	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0180	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0181	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0182	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0183	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0184	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0185	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0186	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0187	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0188	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0189	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0190	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0191	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0192	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0193	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0194	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0195	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0196	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0197	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0198	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0199	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0200	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0201	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0202	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0203	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0204	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0205	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0206	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0207	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
g0208	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	3702	206	56	34	83	9	22	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0002	0/0	3702	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0003	0/0	3702	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0004	0/0	3702	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0006	0/0	3702	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0002c0007	0/0	3702	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0003c0005	0/0	3700	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/1	9710	108	35	15	44	1	12	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0002	0/0	9710	63	3	13	34	7	6	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0003	0/0	9710	6	5	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0004	0/0	9710	6	4	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0005	0/0	9710	3	3	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0006	0/0	9710	3	2	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0007	0/0	9710	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0009	0/0	9710	2	0	0	0	0	2	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0010	0/0	9710	2	0	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0012	0/0	9710	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0013	0/0	9708	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0014	1/0	9710	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0015	0/0	9710	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0016	0/0	9709	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0017	0/0	9710	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0018	0/0	9710	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0019	0/0	9710	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0020	0/0	9711	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0021	0/0	9710	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0001t0022	0/0	9710	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0002t0008	0/0	9710	2	2	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0003t0011	0/0	9710	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0004t0002	0/0	9710	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0001c0006t0001	0/0	9710	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0002c0007t0002	0/0	9710	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654
a0003c0005t0001	0/0	9708	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	copy fasta	chrX	53369149	53427654

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0011	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0013	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0015	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0018	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0020	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0021	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0024	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0026	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0027	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0029	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0031	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0032	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0036	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0037	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0038	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0039	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0040	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0041	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0043	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0046	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0047	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0050	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0051	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0053	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0054	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0056	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0057	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0058	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0059	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0060	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0061	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0062	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0064	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0065	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0066	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0069	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0070	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0071	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0072	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0073	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0074	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0077	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0078	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0079	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0080	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0081	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0082	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0083	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0084	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0085	0/1	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0086	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0087	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0088	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0089	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0090	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0091	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0092	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0093	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0100	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0101	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0102	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0103	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0104	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0105	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0106	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0108	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0109	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0110	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0113	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0114	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0115	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0116	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0117	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0118	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0121	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0125	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0130	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0131	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0132	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0133	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0134	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0135	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0136	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0138	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0139	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0140	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0141	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0001g0144	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0002	0/0	2	0	1	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0003	0/0	2	0	1	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0004	0/0	2	0	2	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0005	0/0	2	0	0	2	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0145	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0146	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0147	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0148	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0149	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0152	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0153	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0155	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0157	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0158	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0159	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0160	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0161	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0162	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0163	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0164	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0165	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0166	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0167	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0168	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0169	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0170	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0171	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0172	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0175	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0176	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0177	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0178	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0179	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0180	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0181	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0182	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0183	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0184	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0185	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0186	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0187	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0188	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0189	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0190	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0191	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0192	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0193	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0194	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0195	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0196	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0199	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0200	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0201	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0202	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0203	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0204	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0205	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0207	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0002g0208	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0098	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0111	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0120	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0122	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0123	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0003g0124	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0004g0001	0/0	2	1	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0004g0096	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0004g0097	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0004g0112	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0004g0126	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0005g0006	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0005g0007	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0005g0008	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0006g0119	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0006g0127	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0006g0129	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0007g0009	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0007g0010	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0009g0154	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0009g0173	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0010g0197	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0010g0198	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0012g0068	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0013g0137	0/0	1	0	0	0	1	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0014g0012	1/0	1	0	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0015g0048	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0016g0143	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0017g0107	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0018g0063	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0019g0099	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0020g0150	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0021g0206	0/0	1	0	0	0	0	1	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0001t0022g0151	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0002t0008g0094	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0002t0008g0095	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0003t0011g0142	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0004t0002g0156	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0001c0006t0001g0045	0/0	1	0	0	1	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0002c0007t0002g0174	0/0	1	0	1	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
a0003c0005t0001g0128	0/0	1	1	0	0	0	0	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0002	g0186	EUR	GBR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00099	hp2	a0001	c0001	t0002	g0191	EUR	GBR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00140	hp1	a0001	c0001	t0002	g0199	EUR	GBR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00280	hp1	a0001	c0001	t0002	g0177	EUR	FIN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00323	hp1	a0001	c0001	t0013	g0137	EUR	FIN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00323	hp2	a0001	c0001	t0002	g0003	EUR	FIN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00438	hp1	a0001	c0001	t0001	g0084	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00438	hp2	a0001	c0001	t0002	g0172	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00544	hp1	a0001	c0001	t0002	g0204	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00544	hp2	a0001	c0006	t0001	g0045	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00597	hp1	a0001	c0001	t0002	g0205	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00597	hp2	a0001	c0001	t0012	g0068	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00609	hp1	a0001	c0004	t0002	g0156	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00621	hp1	a0001	c0001	t0002	g0175	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00642	hp1	a0001	c0001	t0010	g0197	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00673	hp1	a0001	c0001	t0001	g0076	EAS	CHS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00735	hp1	a0001	c0001	t0004	g0112	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00735	hp2	a0001	c0001	t0001	g0056	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00738	hp1	a0001	c0001	t0001	g0021	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00741	hp1	a0001	c0001	t0002	g0176	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG00741	hp2	a0001	c0001	t0001	g0041	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01069	hp1	a0001	c0001	t0001	g0050	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01071	hp1	a0001	c0001	t0002	g0004	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01071	hp2	a0001	c0001	t0001	g0053	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01074	hp1	a0001	c0001	t0002	g0146	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01099	hp1	a0001	c0001	t0002	g0003	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01106	hp1	a0001	c0001	t0001	g0089	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01109	hp1	a0001	c0001	t0002	g0190	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01167	hp1	a0001	c0001	t0001	g0091	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01169	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01169	hp2	a0001	c0001	t0001	g0116	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01175	hp1	a0002	c0007	t0002	g0174	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01175	hp2	a0001	c0001	t0010	g0198	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01192	hp1	a0001	c0001	t0001	g0066	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01243	hp1	a0001	c0001	t0006	g0129	AMR	PUR	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01255	hp1	a0001	c0001	t0003	g0120	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01256	hp1	a0001	c0001	t0002	g0161	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01258	hp1	a0001	c0001	t0002	g0004	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01261	hp1	a0001	c0001	t0002	g0203	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01346	hp1	a0001	c0001	t0002	g0164	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01346	hp2	a0001	c0001	t0001	g0088	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01358	hp1	a0001	c0001	t0001	g0043	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01433	hp1	a0001	c0001	t0001	g0054	AMR	CLM	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01515	hp1	a0001	c0001	t0002	g0185	EUR	IBS	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01884	hp1	a0003	c0005	t0001	g0128	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01884	hp2	a0001	c0001	t0001	g0013	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01891	hp1	a0001	c0001	t0004	g0126	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01891	hp2	a0001	c0001	t0001	g0131	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01928	hp1	a0001	c0001	t0002	g0170	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01934	hp1	a0001	c0001	t0004	g0001	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01943	hp1	a0001	c0001	t0002	g0180	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01952	hp1	a0001	c0001	t0001	g0058	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01981	hp1	a0001	c0001	t0001	g0038	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG01981	hp2	a0001	c0001	t0002	g0166	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02015	hp1	a0001	c0001	t0001	g0065	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02027	hp1	a0001	c0001	t0002	g0158	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02040	hp1	a0001	c0001	t0001	g0033	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02055	hp1	a0001	c0001	t0001	g0136	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02056	hp1	a0001	c0001	t0001	g0060	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02071	hp1	a0001	c0001	t0002	g0193	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02074	hp1	a0001	c0001	t0002	g0192	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02080	hp1	a0001	c0001	t0001	g0070	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02080	hp2	a0001	c0001	t0015	g0048	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02083	hp1	a0001	c0001	t0002	g0181	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02129	hp1	a0001	c0001	t0002	g0202	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02132	hp1	a0001	c0001	t0002	g0005	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02135	hp1	a0001	c0001	t0002	g0183	EAS	KHV	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02145	hp1	a0001	c0001	t0005	g0008	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02155	hp1	a0001	c0001	t0002	g0196	EAS	CDX	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02155	hp2	a0001	c0001	t0002	g0153	EAS	CDX	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02257	hp1	a0001	c0001	t0003	g0122	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02257	hp2	a0001	c0001	t0001	g0118	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02258	hp1	a0001	c0001	t0019	g0099	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02280	hp1	a0001	c0003	t0011	g0142	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02280	hp2	a0001	c0001	t0001	g0093	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02300	hp1	a0001	c0001	t0001	g0069	AMR	PEL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02451	hp1	a0001	c0001	t0001	g0110	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02451	hp2	a0001	c0001	t0001	g0100	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02572	hp1	a0001	c0001	t0001	g0101	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02602	hp1	a0001	c0001	t0001	g0047	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02615	hp1	a0001	c0001	t0001	g0046	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02615	hp2	a0001	c0001	t0006	g0127	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02622	hp1	a0001	c0001	t0001	g0108	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02622	hp2	a0001	c0001	t0001	g0032	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02647	hp1	a0001	c0001	t0001	g0139	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02698	hp1	a0001	c0001	t0002	g0002	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02717	hp1	a0001	c0001	t0004	g0097	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02735	hp1	a0001	c0001	t0001	g0039	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02738	hp1	a0001	c0001	t0021	g0206	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02809	hp1	a0001	c0001	t0005	g0006	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02809	hp2	a0001	c0001	t0001	g0125	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02886	hp1	a0001	c0001	t0001	g0114	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02886	hp2	a0001	c0001	t0001	g0092	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02895	hp1	a0001	c0001	t0017	g0107	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02922	hp1	a0001	c0002	t0008	g0094	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02922	hp2	a0001	c0001	t0003	g0111	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02965	hp1	a0001	c0001	t0003	g0124	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03017	hp1	a0001	c0001	t0001	g0024	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03041	hp1	a0001	c0001	t0001	g0132	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03041	hp2	a0001	c0001	t0005	g0007	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03098	hp1	a0001	c0001	t0001	g0138	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03130	hp1	a0001	c0001	t0003	g0123	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03139	hp1	a0001	c0001	t0001	g0014	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03209	hp1	a0001	c0001	t0004	g0001	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03225	hp1	a0001	c0001	t0001	g0106	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03453	hp1	a0001	c0001	t0001	g0140	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03453	hp2	a0001	c0001	t0001	g0115	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03486	hp1	a0001	c0001	t0006	g0119	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03486	hp2	a0001	c0001	t0003	g0098	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03490	hp1	a0001	c0001	t0002	g0155	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03491	hp1	a0001	c0001	t0001	g0020	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03491	hp2	a0001	c0001	t0009	g0154	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03492	hp1	a0001	c0001	t0009	g0173	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03516	hp1	a0001	c0001	t0001	g0022	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03516	hp2	a0001	c0001	t0001	g0133	AFR	ESN	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03540	hp1	a0001	c0001	t0001	g0113	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03540	hp2	a0001	c0001	t0004	g0096	AFR	GWD	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03579	hp1	a0001	c0001	t0007	g0009	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03654	hp1	a0001	c0001	t0002	g0165	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03688	hp1	a0001	c0001	t0018	g0063	SAS	STU	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03704	hp1	a0001	c0001	t0002	g0149	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03704	hp2	a0001	c0001	t0001	g0037	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03710	hp1	a0001	c0001	t0001	g0017	SAS	PJL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03831	hp1	a0001	c0001	t0002	g0200	SAS	BEB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03831	hp2	a0001	c0001	t0001	g0083	SAS	BEB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03942	hp1	a0001	c0001	t0001	g0059	SAS	BEB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG04115	hp1	a0001	c0001	t0002	g0168	SAS	STU	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG04199	hp1	a0001	c0001	t0001	g0057	SAS	STU	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG04204	hp1	a0001	c0001	t0001	g0081	SAS	STU	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG04228	hp1	a0001	c0001	t0001	g0130	SAS	STU	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18522	hp1	a0001	c0001	t0001	g0015	AFR	YRI	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18612	hp1	a0001	c0001	t0001	g0071	EAS	CHB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18747	hp1	a0001	c0001	t0022	g0151	EAS	CHB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18940	hp1	a0001	c0001	t0002	g0159	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18942	hp1	a0001	c0001	t0002	g0152	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18942	hp2	a0001	c0001	t0001	g0034	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18943	hp1	a0001	c0001	t0001	g0067	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18944	hp1	a0001	c0001	t0001	g0036	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18945	hp1	a0001	c0001	t0001	g0078	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18948	hp1	a0001	c0001	t0001	g0052	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18951	hp1	a0001	c0001	t0001	g0019	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18951	hp2	a0001	c0001	t0002	g0163	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18952	hp1	a0001	c0001	t0002	g0171	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18953	hp1	a0001	c0001	t0001	g0023	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18959	hp1	a0001	c0001	t0002	g0160	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18960	hp1	a0001	c0001	t0002	g0182	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18961	hp1	a0001	c0001	t0001	g0061	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18962	hp1	a0001	c0001	t0001	g0026	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18965	hp1	a0001	c0001	t0001	g0016	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18966	hp1	a0001	c0001	t0001	g0049	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18967	hp1	a0001	c0001	t0001	g0075	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18970	hp1	a0001	c0001	t0001	g0044	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18971	hp1	a0001	c0001	t0001	g0073	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18974	hp1	a0001	c0001	t0001	g0025	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18977	hp1	a0001	c0001	t0002	g0162	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18982	hp1	a0001	c0001	t0001	g0051	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18983	hp1	a0001	c0001	t0002	g0005	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18984	hp1	a0001	c0001	t0001	g0080	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18985	hp1	a0001	c0001	t0002	g0195	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18986	hp1	a0001	c0001	t0002	g0169	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18988	hp1	a0001	c0001	t0001	g0030	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18989	hp1	a0001	c0001	t0001	g0090	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18990	hp1	a0001	c0001	t0001	g0028	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18994	hp1	a0001	c0001	t0001	g0055	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18995	hp1	a0001	c0001	t0001	g0086	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19000	hp1	a0001	c0001	t0001	g0077	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19004	hp1	a0001	c0001	t0001	g0064	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19005	hp1	a0001	c0001	t0001	g0029	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19006	hp1	a0001	c0001	t0002	g0167	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19007	hp1	a0001	c0001	t0002	g0189	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19009	hp1	a0001	c0001	t0002	g0194	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19011	hp1	a0001	c0001	t0001	g0072	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19011	hp2	a0001	c0001	t0001	g0042	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19012	hp1	a0001	c0001	t0001	g0079	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19030	hp1	a0001	c0001	t0001	g0027	AFR	LWK	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19030	hp2	a0001	c0001	t0001	g0103	AFR	LWK	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19043	hp1	a0001	c0001	t0001	g0135	AFR	LWK	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19056	hp1	a0001	c0001	t0001	g0040	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19058	hp1	a0001	c0001	t0001	g0035	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19060	hp1	a0001	c0001	t0002	g0184	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19062	hp1	a0001	c0001	t0001	g0082	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19063	hp1	a0001	c0001	t0002	g0147	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19066	hp1	a0001	c0001	t0002	g0188	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19067	hp1	a0001	c0001	t0001	g0087	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19068	hp1	a0001	c0001	t0002	g0179	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19070	hp1	a0001	c0001	t0001	g0062	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19075	hp1	a0001	c0001	t0016	g0143	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19079	hp1	a0001	c0001	t0001	g0074	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19082	hp1	a0001	c0001	t0002	g0208	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19083	hp1	a0001	c0001	t0002	g0201	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19085	hp1	a0001	c0001	t0020	g0150	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19086	hp1	a0001	c0001	t0001	g0018	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19088	hp1	a0001	c0001	t0001	g0011	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19089	hp1	a0001	c0001	t0002	g0187	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA19091	hp1	a0001	c0001	t0001	g0141	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20129	hp1	a0001	c0001	t0002	g0145	AFR	ASW	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20129	hp2	a0001	c0001	t0001	g0134	AFR	ASW	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20752	hp1	a0001	c0001	t0002	g0157	EUR	TSI	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20805	hp1	a0001	c0001	t0001	g0144	EUR	TSI	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20905	hp1	a0001	c0001	t0001	g0031	SAS	GIH	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02109	hp1	a0001	c0001	t0001	g0102	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02109	hp2	a0001	c0001	t0001	g0121	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02486	hp1	a0001	c0002	t0008	g0095	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02559	hp1	a0001	c0001	t0007	g0010	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG02559	hp2	a0001	c0001	t0001	g0104	AFR	ACB	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
HG03471	hp1	a0001	c0001	t0001	g0109	AFR	MSL	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA18955	hp1	a0001	c0001	t0002	g0207	EAS	JPT	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20300	hp1	a0001	c0001	t0001	g0117	AFR	USA	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA20300	hp2	a0001	c0001	t0002	g0178	AFR	USA	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA21309	hp1	a0001	c0001	t0002	g0148	AFR	LWK	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
NA21309	hp2	a0001	c0001	t0001	g0105	AFR	LWK	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0085	REF	REF	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654
homoSapiens_grch38	hp1	a0001	c0001	t0014	g0012	REF	REF	SMC1A_chrX_53369149_53427654	SMC1A	chrX	53369149	53427654

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:53383145	T T	C C	1	a0002 a0002	1	HG01175.hp1 HG01175.hp1	missense_variant	MODERATE	c.3082A>G c.3082A>G	p.Met1028Val p.Met1028Val	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	20/25	3136/9710	3082/3702	1028/1233	chrX	53383145
chrX:53396337	TG TG	T T	1	a0003 a0003	1	HG01884.hp1 HG01884.hp1	frameshift_variant	HIGH	c.2751delC c.2751delC	p.Lys918fs p.Lys918fs	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/25	2805/9710	2751/3702	917/1233	chrX	53396337
chrX:53396542	TG TG	T T	1	a0003 a0003	1	HG01884.hp1 HG01884.hp1	frameshift_variant	HIGH	c.2637delC c.2637delC	p.Lys880fs p.Lys880fs	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	17/25	2691/9710	2637/3702	879/1233	chrX	53396542

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:53380151	G G	A A	1	a0001c0006 a0001c0006	1	HG00544.hp2 HG00544.hp2	synonymous_variant	LOW	c.3654C>T c.3654C>T	p.Phe1218Phe p.Phe1218Phe	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	3708/9710	3654/3702	1218/1233	chrX	53380151
chrX:53405804	C C	T T	1	a0001c0002 a0001c0002	2	HG02486.hp1 HG02922.hp1 HG02486.hp1 HG02922.hp1	synonymous_variant	LOW	c.1698G>A c.1698G>A	p.Glu566Glu p.Glu566Glu	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	10/25	1752/9710	1698/3702	566/1233	chrX	53405804
chrX:53411842	C C	T T	1	a0001c0004 a0001c0004	1	HG00609.hp1 HG00609.hp1	synonymous_variant	LOW	c.1173G>A c.1173G>A	p.Gln391Gln p.Gln391Gln	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/25	1227/9710	1173/3702	391/1233	chrX	53411842
chrX:53413055	C C	T T	1	a0001c0003 a0001c0003	1	HG02280.hp1 HG02280.hp1	synonymous_variant	LOW	c.699G>A c.699G>A	p.Val233Val p.Val233Val	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	5/25	753/9710	699/3702	233/1233	chrX	53413055

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:53374287	A A	AC AC	1	a0001c0001t0020 a0001c0001t0020	1	NA19085.hp1 NA19085.hp1	3_prime_UTR_variant	MODIFIER	c.5815dupG c.5815dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	5815	chrX	53374287
chrX:53374622	C C	T T	1	a0001c0001t0004 a0001c0001t0004	6	HG00735.hp1 HG01891.hp1 HG01934.hp1 others(3): Show HG00735.hp1 HG01891.hp1 HG01934.hp1 HG02717.hp1 HG03209.hp1 HG03540.hp2	3_prime_UTR_variant	MODIFIER	c.5481G>A c.5481G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	5481	chrX	53374622
chrX:53374723	C C	T T	1	a0001c0001t0009 a0001c0001t0009	2	HG03491.hp2 HG03492.hp1 HG03491.hp2 HG03492.hp1	3_prime_UTR_variant	MODIFIER	c.5380G>A c.5380G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	5380	chrX	53374723
chrX:53375062	T T	A A	1	a0001c0001t0010 a0001c0001t0010	2	HG00642.hp1 HG01175.hp2 HG00642.hp1 HG01175.hp2	3_prime_UTR_variant	MODIFIER	c.5041A>T c.5041A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	5041	chrX	53375062
chrX:53375087	A A	G G	1	a0001c0001t0003 a0001c0001t0003	6	HG01255.hp1 HG02257.hp1 HG02922.hp2 others(3): Show HG01255.hp1 HG02257.hp1 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.5016T>C c.5016T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	5016	chrX	53375087
chrX:53375145	G G	A A	1	a0001c0001t0012 a0001c0001t0012	1	HG00597.hp2 HG00597.hp2	3_prime_UTR_variant	MODIFIER	c.4958C>T c.4958C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	4958	chrX	53375145
chrX:53375149	GGT GGT	G G	1	a0001c0001t0013 a0001c0001t0013	1	HG00323.hp1 HG00323.hp1	3_prime_UTR_variant	MODIFIER	c.4952_4953delAC c.4952_4953delAC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	4952	chrX	53375149
chrX:53375216	A A	G G	1	a0001c0001t0007 a0001c0001t0007	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.4887T>C c.4887T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	4887	chrX	53375216
chrX:53375307	C C	T T	1	a0001c0001t0005 a0001c0001t0005	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	3_prime_UTR_variant	MODIFIER	c.4796G>A c.4796G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	4796	chrX	53375307
chrX:53375335	C C	G G	25	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(22): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0002t0008 a0001c0003t0011 a0001c0004t0002 a0001c0006t0001 a0002c0007t0002 a0003c0005t0001	212	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(209): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.4768G>C c.4768G>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	4768	chrX	53375335
chrX:53376170	C C	T T	1	a0001c0001t0005 a0001c0001t0005	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	3_prime_UTR_variant	MODIFIER	c.3933G>A c.3933G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	3933	chrX	53376170
chrX:53376387	G G	A A	1	a0001c0001t0021 a0001c0001t0021	1	HG02738.hp1 HG02738.hp1	3_prime_UTR_variant	MODIFIER	c.3716C>T c.3716C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	3716	chrX	53376387
chrX:53376395	G G	C C	1	a0001c0001t0022 a0001c0001t0022	1	NA18747.hp1 NA18747.hp1	3_prime_UTR_variant	MODIFIER	c.3708C>G c.3708C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	3708	chrX	53376395
chrX:53377101	C C	T T	1	a0001c0003t0011 a0001c0003t0011	1	HG02280.hp1 HG02280.hp1	3_prime_UTR_variant	MODIFIER	c.3002G>A c.3002G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	3002	chrX	53377101
chrX:53377247	T T	A A	1	a0001c0001t0018 a0001c0001t0018	1	HG03688.hp1 HG03688.hp1	3_prime_UTR_variant	MODIFIER	c.2856A>T c.2856A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2856	chrX	53377247
chrX:53377514	T T	C C	1	a0001c0001t0015 a0001c0001t0015	1	HG02080.hp2 HG02080.hp2	3_prime_UTR_variant	MODIFIER	c.2589A>G c.2589A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2589	chrX	53377514
chrX:53377563	G G	C C	1	a0001c0001t0015 a0001c0001t0015	1	HG02080.hp2 HG02080.hp2	3_prime_UTR_variant	MODIFIER	c.2540C>G c.2540C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2540	chrX	53377563
chrX:53377585	C C	T T	1	a0001c0003t0011 a0001c0003t0011	1	HG02280.hp1 HG02280.hp1	3_prime_UTR_variant	MODIFIER	c.2518G>A c.2518G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2518	chrX	53377585
chrX:53377714	C C	A A	1	a0001c0002t0008 a0001c0002t0008	2	HG02486.hp1 HG02922.hp1 HG02486.hp1 HG02922.hp1	3_prime_UTR_variant	MODIFIER	c.2389G>T c.2389G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2389	chrX	53377714
chrX:53377873	AC AC	A A	1	a0001c0001t0016 a0001c0001t0016	1	NA19075.hp1 NA19075.hp1	3_prime_UTR_variant	MODIFIER	c.2229delG c.2229delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	2229	chrX	53377873
chrX:53378357	G G	A A	1	a0001c0001t0017 a0001c0001t0017	1	HG02895.hp1 HG02895.hp1	3_prime_UTR_variant	MODIFIER	c.1746C>T c.1746C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	1746	chrX	53378357
chrX:53378561	A A	G G	1	a0001c0001t0007 a0001c0001t0007	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.1542T>C c.1542T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	1542	chrX	53378561
chrX:53379788	C C	A A	1	a0001c0001t0006 a0001c0001t0006	3	HG01243.hp1 HG02615.hp2 HG03486.hp1 HG01243.hp1 HG02615.hp2 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.315G>T c.315G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	315	chrX	53379788
chrX:53380007	G G	A A	1	a0001c0001t0018 a0001c0001t0018	1	HG03688.hp1 HG03688.hp1	3_prime_UTR_variant	MODIFIER	c.96C>T c.96C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	96	chrX	53380007
chrX:53380050	T T	C C	1	a0001c0001t0019 a0001c0001t0019	1	HG02258.hp1 HG02258.hp1	3_prime_UTR_variant	MODIFIER	c.53A>G c.53A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	25/25	53	chrX	53380050
chrX:53422619	G G	A A	8	a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 others(5): Show a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0004t0002 a0002c0007t0002	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-19C>T c.-19C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/25		chrX	53422619

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:53380974	G G	A A	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	NA19086.hp1 NA19086.hp1	intron_variant	MODIFIER	c.3507+44C>T c.3507+44C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	23/24	chrX	53380974
chrX:53381496	T T	C C	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG01346.hp2 HG01346.hp2	intron_variant	MODIFIER	c.3438-409A>G c.3438-409A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	22/24	chrX	53381496
chrX:53381690	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.3437+542A>G c.3437+542A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	22/24	chrX	53381690
chrX:53381934	C C	T T	2	a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0139 a0001c0001t0001g0140	2	HG02647.hp1 HG03453.hp1 HG02647.hp1 HG03453.hp1	intron_variant	MODIFIER	c.3437+298G>A c.3437+298G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	22/24	chrX	53381934
chrX:53381976	C C	T T	7	a0001c0001t0001g0027 a0001c0001t0005g0006 a0001c0001t0005g0007 others(4): Show a0001c0001t0001g0027 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	7	HG02145.hp1 HG02280.hp1 HG02559.hp1 others(4): Show HG02145.hp1 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03579.hp1 NA19030.hp1	intron_variant	MODIFIER	c.3437+256G>A c.3437+256G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	22/24	chrX	53381976
chrX:53382914	C C	T T	34	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 others(31): Show a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0017g0107 a0001c0001t0019g0099 a0001c0002t0008g0094 a0001c0002t0008g0095	35	HG00735.hp1 HG01167.hp1 HG01169.hp2 others(32): Show HG00735.hp1 HG01167.hp1 HG01169.hp2 HG01255.hp1 HG01891.hp1 HG01934.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02258.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02622.hp1 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 NA19030.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.3130+183G>A c.3130+183G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	20/24	chrX	53382914
chrX:53383292	GC GC	G G	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2974-40delG c.2974-40delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53383292
chrX:53383511	C C	T T	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.2974-258G>A c.2974-258G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53383511
chrX:53383512	G G	A A	2	a0001c0001t0003g0111 a0001c0001t0003g0123 a0001c0001t0003g0111 a0001c0001t0003g0123	2	HG02922.hp2 HG03130.hp1 HG02922.hp2 HG03130.hp1	intron_variant	MODIFIER	c.2974-259C>T c.2974-259C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53383512
chrX:53383725	A A	C C	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	HG00735.hp2 HG00735.hp2	intron_variant	MODIFIER	c.2974-472T>G c.2974-472T>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53383725
chrX:53383877	G G	A A	1	a0001c0001t0002g0149 a0001c0001t0002g0149	1	HG03704.hp1 HG03704.hp1	intron_variant	MODIFIER	c.2974-624C>T c.2974-624C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53383877
chrX:53384051	A A	G G	206	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(203): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	211	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(208): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2974-798T>C c.2974-798T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384051
chrX:53384198	T T	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.2974-945A>G c.2974-945A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384198
chrX:53384200	T T	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.2974-947A>G c.2974-947A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384200
chrX:53384264	C C	CT CT	9	a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0021 others(6): Show a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0069 a0001c0001t0001g0138 a0001c0001t0002g0169 a0001c0001t0016g0143 a0001c0001t0018g0063	9	HG00738.hp1 HG02300.hp1 HG03098.hp1 others(6): Show HG00738.hp1 HG02300.hp1 HG03098.hp1 HG03491.hp1 HG03516.hp1 HG03688.hp1 NA18522.hp1 NA18986.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2974-1012dupA c.2974-1012dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384264
chrX:53384264	CT CT	C C	2	a0001c0001t0001g0023 a0001c0001t0001g0052 a0001c0001t0001g0023 a0001c0001t0001g0052	2	NA18948.hp1 NA18953.hp1 NA18948.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-1012delA c.2974-1012delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384264
chrX:53384806	G G	A A	3	a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0013g0137 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0013g0137	3	HG00323.hp1 HG03491.hp2 HG03492.hp1 HG00323.hp1 HG03491.hp2 HG03492.hp1	intron_variant	MODIFIER	c.2974-1553C>T c.2974-1553C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384806
chrX:53384867	C C	CA CA	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-1615dupT c.2974-1615dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384867
chrX:53384944	CA CA	C C	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2974-1692delT c.2974-1692delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384944
chrX:53384992	A A	T T	1	a0001c0001t0002g0203 a0001c0001t0002g0203	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.2974-1739T>A c.2974-1739T>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384992
chrX:53384994	T T	A A	19	a0001c0001t0001g0014 a0001c0001t0001g0023 a0001c0001t0001g0042 others(16): Show a0001c0001t0001g0014 a0001c0001t0001g0023 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0086 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0187 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0012g0068	19	HG00597.hp2 HG00673.hp1 HG02056.hp1 others(16): Show HG00597.hp2 HG00673.hp1 HG02056.hp1 HG02145.hp1 HG02155.hp2 HG02809.hp1 HG03041.hp2 HG03139.hp1 NA18942.hp1 NA18943.hp1 NA18953.hp1 NA18961.hp1 NA18970.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19011.hp2 NA19070.hp1 NA19089.hp1	intron_variant	MODIFIER	c.2974-1741A>T c.2974-1741A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53384994
chrX:53385256	G G	GT GT	3	a0001c0001t0001g0090 a0001c0001t0001g0103 a0001c0001t0005g0008 a0001c0001t0001g0090 a0001c0001t0001g0103 a0001c0001t0005g0008	3	HG02145.hp1 NA18989.hp1 NA19030.hp2 HG02145.hp1 NA18989.hp1 NA19030.hp2	intron_variant	MODIFIER	c.2974-2004dupA c.2974-2004dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385256
chrX:53385256	GT GT	G G	68	a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0026 others(65): Show a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0071 a0001c0001t0001g0134 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02698.hp1 HG02965.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG04115.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19066.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.2974-2004delA c.2974-2004delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385256
chrX:53385256	GTT GTT	G G	2	a0001c0001t0002g0147 a0001c0001t0009g0154 a0001c0001t0002g0147 a0001c0001t0009g0154	2	HG03491.hp2 NA19063.hp1 HG03491.hp2 NA19063.hp1	intron_variant	MODIFIER	c.2974-2005_2974-200 others(6): Show c.2974-2005_2974-2004delAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385256
chrX:53385274	T T	A A	1	a0001c0001t0002g0179 a0001c0001t0002g0179	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.2974-2021A>T c.2974-2021A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385274
chrX:53385276	A A	G G	1	a0001c0001t0002g0179 a0001c0001t0002g0179	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.2974-2023T>C c.2974-2023T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385276
chrX:53385277	G G	T T	1	a0001c0001t0002g0179 a0001c0001t0002g0179	1	NA19068.hp1 NA19068.hp1	intron_variant	MODIFIER	c.2974-2024C>A c.2974-2024C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385277
chrX:53385277	GT GT	G G	1	a0001c0001t0003g0124 a0001c0001t0003g0124	1	HG02965.hp1 HG02965.hp1	intron_variant	MODIFIER	c.2974-2025delA c.2974-2025delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385277
chrX:53385288	T T	G G	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2035A>C c.2974-2035A>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385288
chrX:53385289	G G	A A	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2036C>T c.2974-2036C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385289
chrX:53385290	A A	G G	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2037T>C c.2974-2037T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385290
chrX:53385332	G G	A A	2	a0001c0001t0001g0046 a0001c0001t0001g0089 a0001c0001t0001g0046 a0001c0001t0001g0089	2	HG01106.hp1 HG02615.hp1 HG01106.hp1 HG02615.hp1	intron_variant	MODIFIER	c.2974-2079C>T c.2974-2079C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385332
chrX:53385333	C C	T T	10	a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121 others(7): Show a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124	10	HG01167.hp1 HG01169.hp2 HG01255.hp1 others(7): Show HG01167.hp1 HG01169.hp2 HG01255.hp1 HG02109.hp2 HG02257.hp1 HG02809.hp2 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03486.hp2	intron_variant	MODIFIER	c.2974-2080G>A c.2974-2080G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385333
chrX:53385356	C C	T T	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.2974-2103G>A c.2974-2103G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385356
chrX:53385431	C C	T T	2	a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0001 a0001c0001t0004g0096	3	HG01934.hp1 HG03209.hp1 HG03540.hp2 HG01934.hp1 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.2974-2178G>A c.2974-2178G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385431
chrX:53385437	AT AT	A A	3	a0001c0001t0001g0023 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0001g0023 a0001c0001t0007g0009 a0001c0001t0007g0010	3	HG02559.hp1 HG03579.hp1 NA18953.hp1 HG02559.hp1 HG03579.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2185delA c.2974-2185delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385437
chrX:53385566	C C	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.2974-2313G>A c.2974-2313G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385566
chrX:53385631	AT AT	A A	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2379delA c.2974-2379delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385631
chrX:53385683	CG CG	C C	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2431delC c.2974-2431delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53385683
chrX:53386135	G G	C C	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.2974-2882C>G c.2974-2882C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386135
chrX:53386206	G G	GA GA	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2954dupT c.2974-2954dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386206
chrX:53386212	A A	G G	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.2974-2959T>C c.2974-2959T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386212
chrX:53386222	T T	TG TG	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-2970dupC c.2974-2970dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386222
chrX:53386388	A A	C C	2	a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0001 a0001c0001t0004g0096	3	HG01934.hp1 HG03209.hp1 HG03540.hp2 HG01934.hp1 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.2974-3135T>G c.2974-3135T>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386388
chrX:53386502	TC TC	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2974-3250delG c.2974-3250delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386502
chrX:53386674	G G	A A	1	a0001c0001t0002g0183 a0001c0001t0002g0183	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.2974-3421C>T c.2974-3421C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386674
chrX:53386787	T T	A A	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.2974-3534A>T c.2974-3534A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386787
chrX:53386989	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.2974-3736C>T c.2974-3736C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53386989
chrX:53387130	G G	A A	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2974-3877C>T c.2974-3877C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53387130
chrX:53387383	G G	C C	5	a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0067 others(2): Show a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0067 a0001c0001t0001g0086 a0001c0001t0012g0068	5	HG00597.hp2 NA18943.hp1 NA18995.hp1 others(2): Show HG00597.hp2 NA18943.hp1 NA18995.hp1 NA19004.hp1 NA19070.hp1	intron_variant	MODIFIER	c.2974-4130C>G c.2974-4130C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53387383
chrX:53387681	G G	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.2974-4428C>T c.2974-4428C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53387681
chrX:53387939	G G	GA GA	207	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 others(204): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	212	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(209): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2974-4687dupT c.2974-4687dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53387939
chrX:53387987	CAGAATAA others(7): Show CAGAATAACCAAATA	C C	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2974-4748_2974-473 others(18): Show c.2974-4748_2974-4735delTATTTGGTTATTCT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53387987
chrX:53388122	T T	C C	8	a0001c0001t0001g0038 a0001c0001t0001g0041 a0001c0001t0001g0043 others(5): Show a0001c0001t0001g0038 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0058	8	HG00741.hp2 HG01069.hp1 HG01071.hp2 others(5): Show HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01358.hp1 HG01433.hp1 HG01952.hp1 HG01981.hp1 HG04199.hp1	intron_variant	MODIFIER	c.2974-4869A>G c.2974-4869A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388122
chrX:53388298	C C	T T	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.2974-5045G>A c.2974-5045G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388298
chrX:53388320	T T	C C	1	a0001c0001t0001g0092 a0001c0001t0001g0092	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.2974-5067A>G c.2974-5067A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388320
chrX:53388521	C C	T T	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.2974-5268G>A c.2974-5268G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388521
chrX:53388760	G G	A A	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.2974-5507C>T c.2974-5507C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388760
chrX:53388877	G G	T T	2	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0007g0009 a0001c0001t0007g0010	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2974-5624C>A c.2974-5624C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388877
chrX:53388921	T T	TG TG	1	a0001c0001t0002g0195 a0001c0001t0002g0195	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.2974-5669dupC c.2974-5669dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388921
chrX:53388936	G G	T T	2	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0015 a0001c0001t0001g0021	2	HG00738.hp1 NA18522.hp1 HG00738.hp1 NA18522.hp1	intron_variant	MODIFIER	c.2974-5683C>A c.2974-5683C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388936
chrX:53388937	C C	T T	2	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0015 a0001c0001t0001g0021	2	HG00738.hp1 NA18522.hp1 HG00738.hp1 NA18522.hp1	intron_variant	MODIFIER	c.2974-5684G>A c.2974-5684G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388937
chrX:53388984	A A	G G	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.2974-5731T>C c.2974-5731T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388984
chrX:53388996	C C	CA CA	20	a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0047 others(17): Show a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0047 a0001c0001t0001g0081 a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0101 a0001c0001t0002g0147 a0001c0001t0002g0168 a0001c0001t0002g0170 a0001c0001t0002g0193 a0001c0001t0002g0195 a0001c0001t0002g0200 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0004g0096 a0001c0001t0006g0129 a0001c0001t0010g0198 a0001c0002t0008g0095 a0002c0007t0002g0174	20	HG01175.hp1 HG01175.hp2 HG01243.hp1 others(17): Show HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01928.hp1 HG02071.hp1 HG02280.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG03516.hp1 HG03540.hp2 HG03831.hp1 HG04115.hp1 HG04204.hp1 NA18955.hp1 NA18965.hp1 NA18985.hp1 NA18989.hp1 NA19063.hp1 NA19082.hp1	intron_variant	MODIFIER	c.2974-5744dupT c.2974-5744dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388996
chrX:53388996	CA CA	C C	7	a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0050 others(4): Show a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0002g0160 a0001c0001t0005g0007 a0001c0001t0005g0008	7	HG01069.hp1 HG02040.hp1 HG02145.hp1 others(4): Show HG01069.hp1 HG02040.hp1 HG02145.hp1 HG03041.hp2 NA18948.hp1 NA18953.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2974-5744delT c.2974-5744delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388996
chrX:53388996	CAA CAA	C C	1	a0001c0001t0005g0006 a0001c0001t0005g0006	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.2974-5745_2974-574 others(6): Show c.2974-5745_2974-5744delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53388996
chrX:53389101	T T	C C	4	a0001c0001t0001g0092 a0001c0001t0001g0106 a0001c0001t0001g0108 others(1): Show a0001c0001t0001g0092 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0017g0107	4	HG02622.hp1 HG02886.hp2 HG02895.hp1 others(1): Show HG02622.hp1 HG02886.hp2 HG02895.hp1 HG03225.hp1	intron_variant	MODIFIER	c.2973+5677A>G c.2973+5677A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389101
chrX:53389117	G G	GT GT	7	a0001c0001t0001g0032 a0001c0001t0001g0077 a0001c0001t0001g0101 others(4): Show a0001c0001t0001g0032 a0001c0001t0001g0077 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0002g0187 a0001c0001t0002g0204 a0001c0001t0007g0009	7	HG00544.hp1 HG02572.hp1 HG02622.hp2 others(4): Show HG00544.hp1 HG02572.hp1 HG02622.hp2 HG03579.hp1 NA19000.hp1 NA19030.hp2 NA19089.hp1	intron_variant	MODIFIER	c.2973+5660dupA c.2973+5660dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389117
chrX:53389620	C C	T T	1	a0001c0001t0002g0195 a0001c0001t0002g0195	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.2973+5158G>A c.2973+5158G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389620
chrX:53389727	C C	CA CA	2	a0001c0001t0001g0022 a0001c0001t0001g0138 a0001c0001t0001g0022 a0001c0001t0001g0138	2	HG03098.hp1 HG03516.hp1 HG03098.hp1 HG03516.hp1	intron_variant	MODIFIER	c.2973+5050dupT c.2973+5050dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389727
chrX:53389775	A A	C C	1	a0001c0001t0001g0092 a0001c0001t0001g0092	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.2973+5003T>G c.2973+5003T>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389775
chrX:53389842	C C	CT CT	28	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0029 others(25): Show a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0001g0046 a0001c0001t0001g0055 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0108 a0001c0001t0001g0113 a0001c0001t0001g0138 a0001c0001t0002g0157 a0001c0001t0002g0168 a0001c0001t0002g0183 a0001c0001t0002g0190 a0001c0001t0002g0193 a0001c0001t0002g0195 a0001c0001t0002g0200 a0001c0001t0017g0107 a0001c0001t0021g0206	28	HG00738.hp1 HG01109.hp1 HG01346.hp2 others(25): Show HG00738.hp1 HG01109.hp1 HG01346.hp2 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02135.hp1 HG02280.hp2 HG02615.hp1 HG02622.hp1 HG02738.hp1 HG02895.hp1 HG03098.hp1 HG03516.hp1 HG03540.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 NA18967.hp1 NA18985.hp1 NA18989.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19012.hp1 NA19067.hp1 NA20752.hp1	intron_variant	MODIFIER	c.2973+4935dupA c.2973+4935dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	C C	CTT CTT	1	a0001c0001t0001g0089 a0001c0001t0001g0089	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.2973+4934_2973+493 others(6): Show c.2973+4934_2973+4935dupAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	C C	CTTTT CTTTT	1	a0001c0001t0005g0007 a0001c0001t0005g0007	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.2973+4932_2973+493 others(8): Show c.2973+4932_2973+4935dupAAAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	C C	CTTTTT CTTTTT	2	a0001c0001t0005g0006 a0001c0001t0005g0008 a0001c0001t0005g0006 a0001c0001t0005g0008	2	HG02145.hp1 HG02809.hp1 HG02145.hp1 HG02809.hp1	intron_variant	MODIFIER	c.2973+4931_2973+493 others(9): Show c.2973+4931_2973+4935dupAAAAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	CT CT	C C	11	a0001c0001t0001g0025 a0001c0001t0001g0034 a0001c0001t0001g0047 others(8): Show a0001c0001t0001g0025 a0001c0001t0001g0034 a0001c0001t0001g0047 a0001c0001t0001g0132 a0001c0001t0002g0186 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0016g0143 a0001c0002t0008g0094	12	HG00099.hp1 HG00735.hp1 HG01934.hp1 others(9): Show HG00099.hp1 HG00735.hp1 HG01934.hp1 HG02602.hp1 HG02717.hp1 HG02922.hp1 HG03041.hp1 HG03209.hp1 HG03540.hp2 NA18942.hp2 NA18974.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+4935delA c.2973+4935delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	CTT CTT	C C	1	a0001c0001t0002g0185 a0001c0001t0002g0185	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.2973+4934_2973+493 others(6): Show c.2973+4934_2973+4935delAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	CTTTTTTT others(1): Show CTTTTTTTT	C C	1	a0001c0001t0002g0191 a0001c0001t0002g0191	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.2973+4928_2973+493 others(12): Show c.2973+4928_2973+4935delAAAAAAAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389842	CTTTTTTT others(6): Show CTTTTTTTTTTTTT	C C	1	a0001c0001t0002g0207 a0001c0001t0002g0207	1	NA18955.hp1 NA18955.hp1	intron_variant	MODIFIER	c.2973+4923_2973+493 others(17): Show c.2973+4923_2973+4935delAAAAAAAAAAAAA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389842
chrX:53389846	T T	C C	6	a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 others(3): Show a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124	6	HG01255.hp1 HG02257.hp1 HG02922.hp2 others(3): Show HG01255.hp1 HG02257.hp1 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03486.hp2	intron_variant	MODIFIER	c.2973+4932A>G c.2973+4932A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53389846
chrX:53390067	A A	G G	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2973+4711T>C c.2973+4711T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390067
chrX:53390200	C C	CG CG	4	a0001c0001t0001g0041 a0001c0001t0001g0060 a0001c0001t0001g0121 others(1): Show a0001c0001t0001g0041 a0001c0001t0001g0060 a0001c0001t0001g0121 a0001c0001t0001g0141	4	HG00741.hp2 HG02056.hp1 HG02109.hp2 others(1): Show HG00741.hp2 HG02056.hp1 HG02109.hp2 NA19091.hp1	intron_variant	MODIFIER	c.2973+4577dupC c.2973+4577dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390200
chrX:53390200	C C	T T	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.2973+4578G>A c.2973+4578G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390200
chrX:53390204	G G	T T	1	a0001c0001t0002g0164 a0001c0001t0002g0164	1	HG01346.hp1 HG01346.hp1	intron_variant	MODIFIER	c.2973+4574C>A c.2973+4574C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390204
chrX:53390262	C C	A A	67	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(64): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	71	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(68): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.2973+4516G>T c.2973+4516G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390262
chrX:53390340	T T	C C	2	a0001c0001t0001g0022 a0001c0001t0001g0138 a0001c0001t0001g0022 a0001c0001t0001g0138	2	HG03098.hp1 HG03516.hp1 HG03098.hp1 HG03516.hp1	intron_variant	MODIFIER	c.2973+4438A>G c.2973+4438A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390340
chrX:53390742	C C	T T	3	a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121	3	HG01167.hp1 HG01169.hp2 HG02109.hp2 HG01167.hp1 HG01169.hp2 HG02109.hp2	intron_variant	MODIFIER	c.2973+4036G>A c.2973+4036G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390742
chrX:53390767	T T	TG TG	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+4010dupC c.2973+4010dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390767
chrX:53390850	G G	GA GA	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+3927dupT c.2973+3927dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390850
chrX:53390973	C C	CA CA	2	a0001c0001t0001g0087 a0001c0001t0002g0194 a0001c0001t0001g0087 a0001c0001t0002g0194	2	NA19009.hp1 NA19067.hp1 NA19009.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2973+3804dupT c.2973+3804dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390973
chrX:53390973	CA CA	C C	159	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(156): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0140 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0002t0008g0094 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	163	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(160): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03942.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18982.hp1 NA18986.hp1 NA18989.hp1 NA18994.hp1 NA18995.hp1 NA19004.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19056.hp1 NA19060.hp1 NA19062.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2973+3804delT c.2973+3804delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390973
chrX:53390973	CAA CAA	C C	5	a0001c0001t0001g0027 a0001c0001t0001g0061 a0001c0001t0001g0116 others(2): Show a0001c0001t0001g0027 a0001c0001t0001g0061 a0001c0001t0001g0116 a0001c0001t0001g0141 a0001c0001t0002g0168	5	HG01169.hp2 HG04115.hp1 NA18961.hp1 others(2): Show HG01169.hp2 HG04115.hp1 NA18961.hp1 NA19030.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2973+3803_2973+380 others(6): Show c.2973+3803_2973+3804delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53390973
chrX:53391004	G G	GA GA	2	a0001c0001t0002g0147 a0001c0001t0002g0200 a0001c0001t0002g0147 a0001c0001t0002g0200	2	HG03831.hp1 NA19063.hp1 HG03831.hp1 NA19063.hp1	intron_variant	MODIFIER	c.2973+3773dupT c.2973+3773dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391004
chrX:53391004	GA GA	G G	7	a0001c0001t0001g0071 a0001c0001t0001g0083 a0001c0001t0001g0116 others(4): Show a0001c0001t0001g0071 a0001c0001t0001g0083 a0001c0001t0001g0116 a0001c0001t0001g0141 a0001c0001t0002g0145 a0001c0001t0002g0159 a0001c0001t0003g0124	7	HG01169.hp2 HG02965.hp1 HG03831.hp2 others(4): Show HG01169.hp2 HG02965.hp1 HG03831.hp2 NA18612.hp1 NA18940.hp1 NA19091.hp1 NA20129.hp1	intron_variant	MODIFIER	c.2973+3773delT c.2973+3773delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391004
chrX:53391017	AAAG AAAG	A A	1	a0001c0001t0001g0089 a0001c0001t0001g0089	1	HG01106.hp1 HG01106.hp1	intron_variant	MODIFIER	c.2973+3758_2973+376 others(7): Show c.2973+3758_2973+3760delCTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391017
chrX:53391103	C C	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.2973+3675G>A c.2973+3675G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391103
chrX:53391115	A A	AC AC	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+3662dupG c.2973+3662dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391115
chrX:53391458	TA TA	T T	10	a0001c0001t0001g0023 a0001c0001t0001g0034 a0001c0001t0001g0062 others(7): Show a0001c0001t0001g0023 a0001c0001t0001g0034 a0001c0001t0001g0062 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0104 a0001c0001t0002g0160 a0001c0001t0002g0178 a0001c0001t0002g0207 a0001c0001t0020g0150	10	HG02559.hp2 NA18942.hp2 NA18953.hp1 others(7): Show HG02559.hp2 NA18942.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18984.hp1 NA19062.hp1 NA19070.hp1 NA19085.hp1 NA20300.hp2	intron_variant	MODIFIER	c.2973+3319delT c.2973+3319delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391458
chrX:53391514	TA TA	T T	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+3263delT c.2973+3263delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391514
chrX:53391607	G G	A A	1	a0001c0001t0001g0085 a0001c0001t0001g0085	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2973+3171C>T c.2973+3171C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391607
chrX:53391659	T T	TG TG	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+3118dupC c.2973+3118dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391659
chrX:53391684	AC AC	A A	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+3093delG c.2973+3093delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391684
chrX:53391711	T T	C C	6	a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0060 others(3): Show a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0060 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0002g0187	6	HG00673.hp1 HG02056.hp1 NA18970.hp1 others(3): Show HG00673.hp1 HG02056.hp1 NA18970.hp1 NA19000.hp1 NA19011.hp2 NA19089.hp1	intron_variant	MODIFIER	c.2973+3067A>G c.2973+3067A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391711
chrX:53391796	A A	AT AT	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+2981dupA c.2973+2981dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391796
chrX:53391865	G G	GATTGTCC others(5): Show GATTGTCCTGAGC	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+2901_2973+291 others(16): Show c.2973+2901_2973+2912dupGCTCAGGACAAT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391865
chrX:53391899	T T	TC TC	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2878dupG c.2973+2878dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53391899
chrX:53392066	T T	A A	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	NA18970.hp1 NA18970.hp1	intron_variant	MODIFIER	c.2973+2712A>T c.2973+2712A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392066
chrX:53392246	G G	GA GA	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2531_2973+253 others(5): Show c.2973+2531_2973+2532insT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392246
chrX:53392311	G G	GA GA	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2466dupT c.2973+2466dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392311
chrX:53392389	C C	CA CA	7	a0001c0001t0001g0125 a0001c0001t0002g0179 a0001c0001t0002g0181 others(4): Show a0001c0001t0001g0125 a0001c0001t0002g0179 a0001c0001t0002g0181 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0016g0143	7	HG02083.hp1 HG02145.hp1 HG02809.hp1 others(4): Show HG02083.hp1 HG02145.hp1 HG02809.hp1 HG02809.hp2 HG03041.hp2 NA19068.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2388dupT c.2973+2388dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392389
chrX:53392393	A A	C C	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.2973+2385T>G c.2973+2385T>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392393
chrX:53392409	C C	CA CA	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2368dupT c.2973+2368dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392409
chrX:53392458	AT AT	A A	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+2319delA c.2973+2319delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392458
chrX:53392608	C C	T T	2	a0001c0001t0002g0182 a0001c0001t0002g0189 a0001c0001t0002g0182 a0001c0001t0002g0189	2	NA18960.hp1 NA19007.hp1 NA18960.hp1 NA19007.hp1	intron_variant	MODIFIER	c.2973+2170G>A c.2973+2170G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392608
chrX:53392727	C C	T T	1	a0001c0001t0002g0201 a0001c0001t0002g0201	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.2973+2051G>A c.2973+2051G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392727
chrX:53392833	GC GC	G G	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+1944delG c.2973+1944delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53392833
chrX:53393057	TACAAAGA TACAAAGA	T T	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+1714_2973+172 others(11): Show c.2973+1714_2973+1720delTCTTTGT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393057
chrX:53393332	TA TA	T T	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+1445delT c.2973+1445delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393332
chrX:53393358	T T	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.2973+1420A>G c.2973+1420A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393358
chrX:53393590	T T	C C	64	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(61): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	68	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(65): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.2973+1188A>G c.2973+1188A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393590
chrX:53393616	TA TA	T T	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+1161delT c.2973+1161delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393616
chrX:53393732	TA TA	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2973+1045delT c.2973+1045delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393732
chrX:53393931	C C	T T	2	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0007g0009 a0001c0001t0007g0010	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2973+847G>A c.2973+847G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53393931
chrX:53394086	T T	TG TG	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2973+691_2973+692i others(3): Show c.2973+691_2973+692insC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394086
chrX:53394147	C C	T T	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2973+631G>A c.2973+631G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394147
chrX:53394152	C C	CA CA	2	a0001c0001t0002g0153 a0001c0001t0002g0196 a0001c0001t0002g0153 a0001c0001t0002g0196	2	HG02155.hp1 HG02155.hp2 HG02155.hp1 HG02155.hp2	intron_variant	MODIFIER	c.2973+625dupT c.2973+625dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394152
chrX:53394152	CA CA	C C	118	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 others(115): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0145 a0001c0001t0002g0152 a0001c0001t0002g0155 a0001c0001t0002g0160 a0001c0001t0002g0185 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0006t0001g0045 a0003c0005t0001g0128	118	HG00323.hp1 HG00438.hp1 HG00544.hp2 others(115): Show HG00323.hp1 HG00438.hp1 HG00544.hp2 HG00597.hp2 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01071.hp2 HG01106.hp1 HG01167.hp1 HG01169.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01952.hp1 HG01981.hp1 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03942.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18959.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18982.hp1 NA18984.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19056.hp1 NA19058.hp1 NA19062.hp1 NA19067.hp1 NA19070.hp1 NA19079.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2973+625delT c.2973+625delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394152
chrX:53394152	CAA CAA	C C	9	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0039 others(6): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0039 a0001c0001t0001g0050 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0002g0187 a0001c0001t0016g0143 a0001c0003t0011g0142	9	HG01069.hp1 HG02280.hp1 HG02735.hp1 others(6): Show HG01069.hp1 HG02280.hp1 HG02735.hp1 HG03098.hp1 HG03516.hp1 NA18953.hp1 NA19043.hp1 NA19075.hp1 NA19089.hp1	intron_variant	MODIFIER	c.2973+624_2973+625d others(4): Show c.2973+624_2973+625delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394152
chrX:53394343	TG TG	T T	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+434delC c.2973+434delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394343
chrX:53394408	GC GC	G G	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+369delG c.2973+369delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394408
chrX:53394533	T T	C C	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03491.hp1 HG03491.hp1	intron_variant	MODIFIER	c.2973+245A>G c.2973+245A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394533
chrX:53394547	A A	AG AG	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2973+230dupC c.2973+230dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394547
chrX:53394653	CCT CCT	C C	5	a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0002g0003 others(2): Show a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0002g0003 a0001c0001t0002g0161 a0001c0001t0002g0176	6	HG00323.hp2 HG00741.hp1 HG01099.hp1 others(3): Show HG00323.hp2 HG00741.hp1 HG01099.hp1 HG01256.hp1 HG02647.hp1 HG03453.hp1	intron_variant	MODIFIER	c.2973+123_2973+124d others(4): Show c.2973+123_2973+124delAG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394653
chrX:53394717	G G	A A	4	a0001c0001t0001g0092 a0001c0001t0001g0106 a0001c0001t0001g0108 others(1): Show a0001c0001t0001g0092 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0017g0107	4	HG02622.hp1 HG02886.hp2 HG02895.hp1 others(1): Show HG02622.hp1 HG02886.hp2 HG02895.hp1 HG03225.hp1	intron_variant	MODIFIER	c.2973+61C>T c.2973+61C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394717
chrX:53394733	C C	T T	2	a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0185 a0001c0001t0002g0186	2	HG00099.hp1 HG01515.hp1 HG00099.hp1 HG01515.hp1	intron_variant	MODIFIER	c.2973+45G>A c.2973+45G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	19/24	chrX	53394733
chrX:53395235	TG TG	T T	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.2863-348delC c.2863-348delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395235
chrX:53395275	G G	A A	1	a0001c0001t0004g0096 a0001c0001t0004g0096	1	HG03540.hp2 HG03540.hp2	intron_variant	MODIFIER	c.2863-387C>T c.2863-387C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395275
chrX:53395552	C C	A A	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2863-664G>T c.2863-664G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395552
chrX:53395598	T T	C C	6	a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0060 others(3): Show a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0060 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0002g0187	6	HG00673.hp1 HG02056.hp1 NA18970.hp1 others(3): Show HG00673.hp1 HG02056.hp1 NA18970.hp1 NA19000.hp1 NA19011.hp2 NA19089.hp1	intron_variant	MODIFIER	c.2862+629A>G c.2862+629A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395598
chrX:53395600	C C	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03491.hp1 HG03491.hp1	intron_variant	MODIFIER	c.2862+627G>C c.2862+627G>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395600
chrX:53395602	TG TG	T T	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2862+624delC c.2862+624delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395602
chrX:53395677	TC TC	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+549delG c.2862+549delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395677
chrX:53395728	TG TG	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+498delC c.2862+498delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395728
chrX:53395833	T T	TC TC	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+393dupG c.2862+393dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53395833
chrX:53396074	A A	AC AC	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+152dupG c.2862+152dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53396074
chrX:53396115	AC AC	A A	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+111delG c.2862+111delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53396115
chrX:53396122	GC GC	G G	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+104delG c.2862+104delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53396122
chrX:53396178	TG TG	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2862+48delC c.2862+48delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	18/24	chrX	53396178
chrX:53396393	CA CA	C C	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2709-14delT c.2709-14delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	17/24	chrX	53396393
chrX:53396628	C C	CA CA	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-12dupT c.2563-12dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53396628
chrX:53396665	CT CT	C C	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-49delA c.2563-49delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53396665
chrX:53396709	GT GT	G G	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-93delA c.2563-93delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53396709
chrX:53396810	AT AT	A A	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-194delA c.2563-194delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53396810
chrX:53397044	TG TG	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-428delC c.2563-428delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397044
chrX:53397061	G G	GT GT	6	a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 others(3): Show a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0002g0200 a0003c0005t0001g0128	6	HG01884.hp1 HG02055.hp1 HG03516.hp2 others(3): Show HG01884.hp1 HG02055.hp1 HG03516.hp2 HG03831.hp1 NA19043.hp1 NA20129.hp2	intron_variant	MODIFIER	c.2563-445dupA c.2563-445dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397061
chrX:53397063	TG TG	T T	4	a0001c0001t0001g0023 a0001c0001t0001g0054 a0001c0001t0001g0062 others(1): Show a0001c0001t0001g0023 a0001c0001t0001g0054 a0001c0001t0001g0062 a0001c0001t0001g0115	4	HG01433.hp1 HG03453.hp2 NA18953.hp1 others(1): Show HG01433.hp1 HG03453.hp2 NA18953.hp1 NA19070.hp1	intron_variant	MODIFIER	c.2563-447delC c.2563-447delC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397063
chrX:53397064	G G	T T	202	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(199): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	207	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(204): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2563-447C>A c.2563-447C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397064
chrX:53397075	A A	T T	1	a0001c0001t0004g0112 a0001c0001t0004g0112	1	HG00735.hp1 HG00735.hp1	intron_variant	MODIFIER	c.2563-458T>A c.2563-458T>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397075
chrX:53397190	C C	T T	3	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	intron_variant	MODIFIER	c.2563-573G>A c.2563-573G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397190
chrX:53397306	T T	C C	1	a0001c0001t0001g0108 a0001c0001t0001g0108	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.2563-689A>G c.2563-689A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397306
chrX:53397328	TC TC	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-712delG c.2563-712delG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397328
chrX:53397455	C C	T T	3	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	intron_variant	MODIFIER	c.2563-838G>A c.2563-838G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397455
chrX:53397486	C C	CG CG	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.2563-870dupC c.2563-870dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397486
chrX:53397505	T T	C C	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-888A>G c.2563-888A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397505
chrX:53397506	G G	T T	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-889C>A c.2563-889C>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397506
chrX:53397580	CA CA	C C	131	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(128): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0187 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0006t0001g0045	132	HG00323.hp1 HG00438.hp1 HG00544.hp2 others(129): Show HG00323.hp1 HG00438.hp1 HG00544.hp2 HG00597.hp2 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01106.hp1 HG01167.hp1 HG01169.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01952.hp1 HG01981.hp1 HG02015.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp2 HG03942.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18953.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18982.hp1 NA18984.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19062.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp2 NA20300.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2563-964delT c.2563-964delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397580
chrX:53397580	CAA CAA	C C	1	a0003c0005t0001g0128 a0003c0005t0001g0128	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.2563-965_2563-964d others(4): Show c.2563-965_2563-964delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397580
chrX:53397723	T T	TG TG	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2563-1107dupC c.2563-1107dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397723
chrX:53397736	G G	GT GT	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2563-1120dupA c.2563-1120dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53397736
chrX:53398003	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.2563-1386A>G c.2563-1386A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398003
chrX:53398030	C C	CA CA	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.2563-1414dupT c.2563-1414dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398030
chrX:53398183	C C	CA CA	8	a0001c0001t0001g0069 a0001c0001t0001g0109 a0001c0001t0001g0130 others(5): Show a0001c0001t0001g0069 a0001c0001t0001g0109 a0001c0001t0001g0130 a0001c0001t0002g0148 a0001c0001t0002g0152 a0001c0001t0002g0161 a0001c0001t0002g0163 a0001c0001t0002g0192	8	HG01256.hp1 HG02074.hp1 HG02300.hp1 others(5): Show HG01256.hp1 HG02074.hp1 HG02300.hp1 HG03471.hp1 HG04228.hp1 NA18942.hp1 NA18951.hp2 NA21309.hp1	intron_variant	MODIFIER	c.2562+1405dupT c.2562+1405dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398183
chrX:53398183	C C	CAA CAA	61	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(58): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0149 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0162 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	65	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(62): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1	intron_variant	MODIFIER	c.2562+1404_2562+140 others(6): Show c.2562+1404_2562+1405dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398183
chrX:53398183	C C	CAAA CAAA	1	a0001c0001t0002g0200 a0001c0001t0002g0200	1	HG03831.hp1 HG03831.hp1	intron_variant	MODIFIER	c.2562+1403_2562+140 others(7): Show c.2562+1403_2562+1405dupTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398183
chrX:53398183	CA CA	C C	5	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0050 others(2): Show a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0050 a0001c0001t0001g0052 a0001c0001t0002g0187	5	HG00738.hp1 HG01069.hp1 NA18522.hp1 others(2): Show HG00738.hp1 HG01069.hp1 NA18522.hp1 NA18948.hp1 NA19089.hp1	intron_variant	MODIFIER	c.2562+1405delT c.2562+1405delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398183
chrX:53398368	G G	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.2562+1221C>G c.2562+1221C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53398368
chrX:53399453	G G	A A	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2562+136C>T c.2562+136C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	16/24	chrX	53399453
chrX:53400064	A A	G G	2	a0001c0001t0002g0182 a0001c0001t0002g0189 a0001c0001t0002g0182 a0001c0001t0002g0189	2	NA18960.hp1 NA19007.hp1 NA18960.hp1 NA19007.hp1	intron_variant	MODIFIER	c.2421-334T>C c.2421-334T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53400064
chrX:53400274	T T	C C	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	NA18612.hp1 NA18612.hp1	intron_variant	MODIFIER	c.2421-544A>G c.2421-544A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53400274
chrX:53400394	C C	T T	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.2421-664G>A c.2421-664G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53400394
chrX:53401048	G G	A A	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2421-1318C>T c.2421-1318C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53401048
chrX:53401049	C C	A A	1	a0001c0001t0016g0143 a0001c0001t0016g0143	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.2421-1319G>T c.2421-1319G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53401049
chrX:53401719	GTATATAT others(6): Show GTATATATATACAT	G G	1	a0001c0001t0001g0081 a0001c0001t0001g0081	1	HG04204.hp1 HG04204.hp1	intron_variant	MODIFIER	c.2420+1834_2420+184 others(17): Show c.2420+1834_2420+1846delATGTATATATATA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53401719
chrX:53401910	C C	CT CT	2	a0001c0001t0001g0011 a0001c0001t0002g0159 a0001c0001t0001g0011 a0001c0001t0002g0159	2	NA18940.hp1 NA19088.hp1 NA18940.hp1 NA19088.hp1	intron_variant	MODIFIER	c.2420+1655dupA c.2420+1655dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53401910
chrX:53401910	CT CT	C C	2	a0001c0001t0001g0082 a0001c0001t0002g0182 a0001c0001t0001g0082 a0001c0001t0002g0182	2	NA18960.hp1 NA19062.hp1 NA18960.hp1 NA19062.hp1	intron_variant	MODIFIER	c.2420+1655delA c.2420+1655delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53401910
chrX:53402299	T T	C C	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.2420+1267A>G c.2420+1267A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402299
chrX:53402500	T T	C C	1	a0001c0001t0015g0048 a0001c0001t0015g0048	1	HG02080.hp2 HG02080.hp2	intron_variant	MODIFIER	c.2420+1066A>G c.2420+1066A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402500
chrX:53402553	T T	TA TA	2	a0001c0001t0001g0081 a0001c0001t0002g0159 a0001c0001t0001g0081 a0001c0001t0002g0159	2	HG04204.hp1 NA18940.hp1 HG04204.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+1012dupT c.2420+1012dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402553
chrX:53402553	TA TA	T T	2	a0001c0001t0001g0022 a0001c0001t0001g0038 a0001c0001t0001g0022 a0001c0001t0001g0038	2	HG01981.hp1 HG03516.hp1 HG01981.hp1 HG03516.hp1	intron_variant	MODIFIER	c.2420+1012delT c.2420+1012delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402553
chrX:53402596	T T	TG TG	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+969dupC c.2420+969dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402596
chrX:53402705	A A	C C	207	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 others(204): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	212	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(209): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2420+861T>G c.2420+861T>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402705
chrX:53402718	G G	A A	3	a0001c0001t0001g0065 a0001c0001t0002g0163 a0001c0001t0002g0171 a0001c0001t0001g0065 a0001c0001t0002g0163 a0001c0001t0002g0171	3	HG02015.hp1 NA18951.hp2 NA18952.hp1 HG02015.hp1 NA18951.hp2 NA18952.hp1	intron_variant	MODIFIER	c.2420+848C>T c.2420+848C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402718
chrX:53402868	C C	CAAA CAAA	1	a0001c0001t0001g0130 a0001c0001t0001g0130	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.2420+695_2420+697d others(5): Show c.2420+695_2420+697dupTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAA CAAAAA	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.2420+693_2420+697d others(7): Show c.2420+693_2420+697dupTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAA CAAAAAA	2	a0001c0001t0001g0015 a0001c0001t0001g0026 a0001c0001t0001g0015 a0001c0001t0001g0026	2	NA18522.hp1 NA18962.hp1 NA18522.hp1 NA18962.hp1	intron_variant	MODIFIER	c.2420+692_2420+697d others(8): Show c.2420+692_2420+697dupTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(1): Show CAAAAAAAA	1	a0001c0001t0001g0079 a0001c0001t0001g0079	1	NA19012.hp1 NA19012.hp1	intron_variant	MODIFIER	c.2420+690_2420+697d others(10): Show c.2420+690_2420+697dupTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(2): Show CAAAAAAAAA	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.2420+689_2420+697d others(11): Show c.2420+689_2420+697dupTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	43	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(40): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0191 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0010g0197 a0001c0004t0002g0156	47	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(44): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00597.hp1 HG00609.hp1 HG00642.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01169.hp1 HG01256.hp1 HG01258.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG03490.hp1 HG04115.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19083.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.2420+688_2420+697d others(12): Show c.2420+688_2420+697dupTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	23	a0001c0001t0002g0149 a0001c0001t0002g0158 a0001c0001t0002g0164 others(20): Show a0001c0001t0002g0149 a0001c0001t0002g0158 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0190 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0200 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0002c0007t0002g0174	23	HG00438.hp2 HG00544.hp1 HG00621.hp1 others(20): Show HG00438.hp2 HG00544.hp1 HG00621.hp1 HG00741.hp1 HG01109.hp1 HG01175.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02135.hp1 HG02738.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 NA18747.hp1 NA19060.hp1 NA19082.hp1 NA19085.hp1	intron_variant	MODIFIER	c.2420+687_2420+697d others(13): Show c.2420+687_2420+697dupTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(5): Show CAAAAAAAAAAAA	1	a0001c0001t0002g0166 a0001c0001t0002g0166	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.2420+686_2420+697d others(14): Show c.2420+686_2420+697dupTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	3	a0001c0001t0002g0159 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0001t0002g0159 a0001c0002t0008g0094 a0001c0002t0008g0095	3	HG02486.hp1 HG02922.hp1 NA18940.hp1 HG02486.hp1 HG02922.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+685_2420+697d others(15): Show c.2420+685_2420+697dupTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	1	a0001c0001t0007g0010 a0001c0001t0007g0010	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.2420+682_2420+697d others(18): Show c.2420+682_2420+697dupTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	1	a0001c0001t0007g0009 a0001c0001t0007g0009	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.2420+681_2420+697d others(19): Show c.2420+681_2420+697dupTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0001g0106 a0001c0001t0001g0113	2	HG03225.hp1 HG03540.hp1 HG03225.hp1 HG03540.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(21): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	5	a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0091 others(2): Show a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0017g0107	5	HG01167.hp1 HG01169.hp2 HG02040.hp1 others(2): Show HG01167.hp1 HG01169.hp2 HG02040.hp1 HG02895.hp1 HG03704.hp2	intron_variant	MODIFIER	c.2420+697_2420+698i others(22): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	32	a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0023 others(29): Show a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0108 a0001c0001t0001g0114 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0132 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0123 a0001c0001t0004g0096 a0001c0001t0004g0112 a0001c0001t0012g0068	32	HG00597.hp2 HG00735.hp1 HG00738.hp1 others(29): Show HG00597.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01255.hp1 HG01433.hp1 HG01981.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp2 HG02451.hp2 HG02572.hp1 HG02622.hp1 HG02735.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG03041.hp1 HG03130.hp1 HG03540.hp2 HG03710.hp1 NA18953.hp1 NA18989.hp1 NA18995.hp1 NA19004.hp1 NA19011.hp2 NA19056.hp1 NA19070.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2420+697_2420+698i others(23): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	40	a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0020 others(37): Show a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0024 a0001c0001t0001g0028 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0065 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0093 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0109 a0001c0001t0001g0117 a0001c0001t0001g0131 a0001c0001t0001g0144 a0001c0001t0003g0098 a0001c0001t0003g0122 a0001c0001t0003g0124 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0129 a0001c0001t0015g0048 a0001c0001t0018g0063 a0001c0001t0019g0099	40	HG00438.hp1 HG01243.hp1 HG01358.hp1 others(37): Show HG00438.hp1 HG01243.hp1 HG01358.hp1 HG01891.hp1 HG01891.hp2 HG02015.hp1 HG02056.hp1 HG02080.hp2 HG02257.hp1 HG02258.hp1 HG02280.hp2 HG02559.hp2 HG02602.hp1 HG02965.hp1 HG03017.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03688.hp1 HG04199.hp1 HG04204.hp1 NA18612.hp1 NA18942.hp2 NA18945.hp1 NA18951.hp1 NA18965.hp1 NA18970.hp1 NA18971.hp1 NA18984.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19011.hp1 NA19030.hp2 NA19058.hp1 NA19067.hp1 NA20300.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(24): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	20	a0001c0001t0001g0018 a0001c0001t0001g0029 a0001c0001t0001g0030 others(17): Show a0001c0001t0001g0018 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0061 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0083 a0001c0001t0001g0134 a0001c0001t0004g0001 a0001c0001t0016g0143 a0001c0006t0001g0045	21	HG00544.hp2 HG00735.hp2 HG01192.hp1 others(18): Show HG00544.hp2 HG00735.hp2 HG01192.hp1 HG01934.hp1 HG01952.hp1 HG02080.hp1 HG02300.hp1 HG02622.hp2 HG03209.hp1 HG03831.hp2 HG03942.hp1 NA18943.hp1 NA18961.hp1 NA18967.hp1 NA18988.hp1 NA19005.hp1 NA19075.hp1 NA19079.hp1 NA19086.hp1 NA20129.hp2 NA20905.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(25): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	10	a0001c0001t0001g0011 a0001c0001t0001g0022 a0001c0001t0001g0049 others(7): Show a0001c0001t0001g0011 a0001c0001t0001g0022 a0001c0001t0001g0049 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0139 a0001c0001t0004g0097 a0001c0001t0006g0127	10	HG00673.hp1 HG02615.hp2 HG02647.hp1 others(7): Show HG00673.hp1 HG02615.hp2 HG02647.hp1 HG02717.hp1 HG03516.hp1 HG03516.hp2 NA18966.hp1 NA19043.hp1 NA19062.hp1 NA19088.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(26): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0136 a0001c0001t0013g0137 a0001c0001t0001g0136 a0001c0001t0013g0137	2	HG00323.hp1 HG02055.hp1 HG00323.hp1 HG02055.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(27): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(28): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0115 a0001c0001t0001g0115	1	HG03453.hp2 HG03453.hp2	intron_variant	MODIFIER	c.2420+697_2420+698i others(29): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0110 a0003c0005t0001g0128 a0001c0001t0001g0110 a0003c0005t0001g0128	2	HG01884.hp1 HG02451.hp1 HG01884.hp1 HG02451.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(30): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(24): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG01346.hp2 HG01346.hp2	intron_variant	MODIFIER	c.2420+697_2420+698i others(33): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0046 a0001c0001t0001g0089 a0001c0001t0001g0046 a0001c0001t0001g0089	2	HG01106.hp1 HG02615.hp1 HG01106.hp1 HG02615.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(35): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(32): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0140 a0001c0001t0001g0140	1	HG03453.hp1 HG03453.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(41): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402868	C C	CAAAAAAA others(53): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA	1	a0001c0001t0001g0138 a0001c0001t0001g0138	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.2420+697_2420+698i others(62): Show c.2420+697_2420+698insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402868
chrX:53402885	A A	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAG	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.2420+680_2420+681i others(25): Show c.2420+680_2420+681insCTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402885
chrX:53402885	A A	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAAAAAAG	2	a0001c0001t0001g0052 a0001c0001t0001g0141 a0001c0001t0001g0052 a0001c0001t0001g0141	2	NA18948.hp1 NA19091.hp1 NA18948.hp1 NA19091.hp1	intron_variant	MODIFIER	c.2420+680_2420+681i others(24): Show c.2420+680_2420+681insCTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402885
chrX:53402885	A A	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAAAAG	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.2420+680_2420+681i others(23): Show c.2420+680_2420+681insCTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402885
chrX:53402885	A A	AAAAAAAA others(1): Show AAAAAAAAG	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.2420+680_2420+681i others(10): Show c.2420+680_2420+681insCTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53402885
chrX:53403019	C C	CA CA	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+546dupT c.2420+546dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403019
chrX:53403171	C C	CA CA	3	a0001c0001t0001g0032 a0001c0001t0001g0138 a0001c0001t0002g0159 a0001c0001t0001g0032 a0001c0001t0001g0138 a0001c0001t0002g0159	3	HG02622.hp2 HG03098.hp1 NA18940.hp1 HG02622.hp2 HG03098.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+394dupT c.2420+394dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403171
chrX:53403171	CA CA	C C	169	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 others(166): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0136 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0207 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0129 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0006t0001g0045 a0002c0007t0002g0174	174	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(171): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03831.hp2 HG04115.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18994.hp1 NA18995.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2420+394delT c.2420+394delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403171
chrX:53403171	CAA CAA	C C	18	a0001c0001t0001g0017 a0001c0001t0001g0050 a0001c0001t0001g0133 others(15): Show a0001c0001t0001g0017 a0001c0001t0001g0050 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0160 a0001c0001t0002g0179 a0001c0001t0002g0193 a0001c0001t0002g0205 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0004t0002g0156 a0003c0005t0001g0128	18	HG00597.hp1 HG00609.hp1 HG01069.hp1 others(15): Show HG00597.hp1 HG00609.hp1 HG01069.hp1 HG01884.hp1 HG02071.hp1 HG02155.hp2 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03516.hp2 HG03579.hp1 HG03710.hp1 NA18942.hp1 NA18959.hp1 NA19043.hp1 NA19068.hp1 NA20129.hp2	intron_variant	MODIFIER	c.2420+393_2420+394d others(4): Show c.2420+393_2420+394delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403171
chrX:53403171	CAAA CAAA	C C	1	a0001c0001t0005g0008 a0001c0001t0005g0008	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.2420+392_2420+394d others(5): Show c.2420+392_2420+394delTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403171
chrX:53403214	T T	TAA TAA	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2420+350_2420+351d others(4): Show c.2420+350_2420+351dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403214
chrX:53403214	TA TA	T T	2	a0001c0001t0001g0050 a0001c0001t0002g0167 a0001c0001t0001g0050 a0001c0001t0002g0167	2	HG01069.hp1 NA19006.hp1 HG01069.hp1 NA19006.hp1	intron_variant	MODIFIER	c.2420+351delT c.2420+351delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403214
chrX:53403442	T T	C C	1	a0001c0001t0002g0195 a0001c0001t0002g0195	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.2420+124A>G c.2420+124A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	15/24	chrX	53403442
chrX:53403760	G G	GC GC	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2313+16dupG c.2313+16dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	14/24	chrX	53403760
chrX:53403898	A A	G G	17	a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0033 others(14): Show a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0049 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0084 a0001c0001t0001g0087 a0001c0001t0015g0048	17	HG00438.hp1 HG02040.hp1 HG02080.hp2 others(14): Show HG00438.hp1 HG02040.hp1 HG02080.hp2 NA18612.hp1 NA18942.hp2 NA18945.hp1 NA18951.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18984.hp1 NA19011.hp1 NA19012.hp1 NA19058.hp1 NA19067.hp1 NA19079.hp1	splice_region_variant&intron_variant	LOW	c.2197-5T>C c.2197-5T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53403898
chrX:53403940	G G	GA GA	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2197-48dupT c.2197-48dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53403940
chrX:53404123	T T	TA TA	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2197-231dupT c.2197-231dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404123
chrX:53404199	A A	AT AT	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2197-307dupA c.2197-307dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404199
chrX:53404248	A A	G G	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.2197-355T>C c.2197-355T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404248
chrX:53404278	T T	TA TA	2	a0001c0001t0002g0159 a0001c0001t0002g0208 a0001c0001t0002g0159 a0001c0001t0002g0208	2	NA18940.hp1 NA19082.hp1 NA18940.hp1 NA19082.hp1	intron_variant	MODIFIER	c.2197-386dupT c.2197-386dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404278
chrX:53404314	T T	TC TC	12	a0001c0001t0001g0026 a0001c0001t0001g0047 a0001c0001t0001g0060 others(9): Show a0001c0001t0001g0026 a0001c0001t0001g0047 a0001c0001t0001g0060 a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0001g0089 a0001c0001t0001g0133 a0001c0001t0002g0167 a0001c0001t0002g0190 a0001c0001t0004g0112 a0001c0001t0005g0006 a0001c0001t0021g0206	12	HG00735.hp1 HG01106.hp1 HG01109.hp1 others(9): Show HG00735.hp1 HG01106.hp1 HG01109.hp1 HG02056.hp1 HG02602.hp1 HG02738.hp1 HG02809.hp1 HG03516.hp2 NA18962.hp1 NA19006.hp1 NA19012.hp1 NA19067.hp1	intron_variant	MODIFIER	c.2197-422dupG c.2197-422dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404314
chrX:53404470	T T	C C	1	a0001c0001t0002g0196 a0001c0001t0002g0196	1	HG02155.hp1 HG02155.hp1	intron_variant	MODIFIER	c.2196+542A>G c.2196+542A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404470
chrX:53404697	C C	T T	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.2196+315G>A c.2196+315G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404697
chrX:53404752	G G	A A	50	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 others(47): Show a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0017g0107 a0001c0001t0019g0099 a0001c0002t0008g0094 a0001c0002t0008g0095 a0003c0005t0001g0128	51	HG00735.hp1 HG00738.hp1 HG01167.hp1 others(48): Show HG00735.hp1 HG00738.hp1 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG01255.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG04228.hp1 NA18522.hp1 NA19030.hp2 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.2196+260C>T c.2196+260C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404752
chrX:53404809	A A	G G	206	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(203): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	211	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(208): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2196+203T>C c.2196+203T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404809
chrX:53404835	A A	T T	207	a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 others(204): Show a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	212	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(209): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.2196+177T>A c.2196+177T>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404835
chrX:53404884	T T	C C	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.2196+128A>G c.2196+128A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	13/24	chrX	53404884
chrX:53405210	T T	TC TC	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2058+34dupG c.2058+34dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	12/24	chrX	53405210
chrX:53405219	T T	TA TA	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.2058+25dupT c.2058+25dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	12/24	chrX	53405219
chrX:53406035	A A	AG AG	1	a0001c0001t0002g0160 a0001c0001t0002g0160	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.1546-80dupC c.1546-80dupC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406035
chrX:53406036	G G	C C	3	a0001c0001t0001g0110 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0001g0110 a0001c0001t0001g0133 a0001c0001t0001g0136	3	HG02055.hp1 HG02451.hp1 HG03516.hp2 HG02055.hp1 HG02451.hp1 HG03516.hp2	intron_variant	MODIFIER	c.1546-80C>G c.1546-80C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406036
chrX:53406310	T T	C C	1	a0001c0001t0002g0204 a0001c0001t0002g0204	1	HG00544.hp1 HG00544.hp1	intron_variant	MODIFIER	c.1546-354A>G c.1546-354A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406310
chrX:53406445	C C	A A	68	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(65): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1546-489G>T c.1546-489G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406445
chrX:53406622	A A	AT AT	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.1546-667dupA c.1546-667dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406622
chrX:53406730	C C	T T	1	a0001c0001t0005g0006 a0001c0001t0005g0006	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.1546-774G>A c.1546-774G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406730
chrX:53406781	T T	TC TC	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.1546-826dupG c.1546-826dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406781
chrX:53406843	G G	GC GC	1	a0001c0001t0002g0159 a0001c0001t0002g0159	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.1546-888dupG c.1546-888dupG	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53406843
chrX:53407645	C C	A A	5	a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 others(2): Show a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126	6	HG00735.hp1 HG01891.hp1 HG01934.hp1 others(3): Show HG00735.hp1 HG01891.hp1 HG01934.hp1 HG02717.hp1 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.1545+1417G>T c.1545+1417G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53407645
chrX:53407839	A A	G G	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.1545+1223T>C c.1545+1223T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53407839
chrX:53407930	A A	G G	2	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0007g0009 a0001c0001t0007g0010	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.1545+1132T>C c.1545+1132T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53407930
chrX:53408003	ATATAT ATATAT	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1545+1054_1545+105 others(9): Show c.1545+1054_1545+1058delATATA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408003
chrX:53408136	C C	T T	1	a0001c0001t0001g0110 a0001c0001t0001g0110	1	HG02451.hp1 HG02451.hp1	intron_variant	MODIFIER	c.1545+926G>A c.1545+926G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408136
chrX:53408495	T T	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1545+567A>G c.1545+567A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408495
chrX:53408702	G G	C C	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1545+360C>G c.1545+360C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408702
chrX:53408742	C C	T T	1	a0001c0001t0002g0178 a0001c0001t0002g0178	1	NA20300.hp2 NA20300.hp2	intron_variant	MODIFIER	c.1545+320G>A c.1545+320G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408742
chrX:53408756	T T	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.1545+306A>G c.1545+306A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408756
chrX:53408840	TA TA	T T	188	a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0017 others(185): Show a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174	193	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(190): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1545+221delT c.1545+221delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408840
chrX:53408840	TAA TAA	T T	15	a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 others(12): Show a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0062 a0001c0001t0001g0071 a0001c0001t0001g0102 a0001c0001t0001g0141 a0001c0001t0002g0152 a0001c0001t0002g0160 a0001c0001t0003g0124 a0001c0001t0005g0007 a0001c0001t0018g0063	15	HG00738.hp1 HG02109.hp1 HG02965.hp1 others(12): Show HG00738.hp1 HG02109.hp1 HG02965.hp1 HG03041.hp2 HG03139.hp1 HG03491.hp1 HG03516.hp1 HG03688.hp1 NA18522.hp1 NA18612.hp1 NA18942.hp1 NA18951.hp1 NA18959.hp1 NA19070.hp1 NA19091.hp1	intron_variant	MODIFIER	c.1545+220_1545+221d others(4): Show c.1545+220_1545+221delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	9/24	chrX	53408840
chrX:53409873	G G	A A	2	a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0185 a0001c0001t0002g0186	2	HG00099.hp1 HG01515.hp1 HG00099.hp1 HG01515.hp1	intron_variant	MODIFIER	c.1255-370C>T c.1255-370C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53409873
chrX:53410097	C C	T T	6	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 others(3): Show a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	6	HG02145.hp1 HG02280.hp1 HG02559.hp1 others(3): Show HG02145.hp1 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03579.hp1	intron_variant	MODIFIER	c.1255-594G>A c.1255-594G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410097
chrX:53410232	C C	T T	3	a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030	3	NA18988.hp1 NA18990.hp1 NA19005.hp1 NA18988.hp1 NA18990.hp1 NA19005.hp1	intron_variant	MODIFIER	c.1255-729G>A c.1255-729G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410232
chrX:53410630	T T	C C	1	a0001c0001t0002g0177 a0001c0001t0002g0177	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.1255-1127A>G c.1255-1127A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410630
chrX:53410926	C C	CA CA	3	a0001c0001t0001g0013 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0001g0013 a0001c0001t0002g0158 a0001c0001t0002g0159	3	HG01884.hp2 HG02027.hp1 NA18940.hp1 HG01884.hp2 HG02027.hp1 NA18940.hp1	intron_variant	MODIFIER	c.1254+834dupT c.1254+834dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAA CAA	1	a0001c0001t0005g0008 a0001c0001t0005g0008	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.1254+833_1254+834d others(4): Show c.1254+833_1254+834dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAA CAAAAAA	2	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0015 a0001c0001t0001g0021	2	HG00738.hp1 NA18522.hp1 HG00738.hp1 NA18522.hp1	intron_variant	MODIFIER	c.1254+829_1254+834d others(8): Show c.1254+829_1254+834dupTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA CAAAAAAA	2	a0001c0001t0001g0027 a0001c0001t0006g0119 a0001c0001t0001g0027 a0001c0001t0006g0119	2	HG03486.hp1 NA19030.hp1 HG03486.hp1 NA19030.hp1	intron_variant	MODIFIER	c.1254+828_1254+834d others(9): Show c.1254+828_1254+834dupTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(3): Show CAAAAAAAAAA	1	a0001c0001t0003g0120 a0001c0001t0003g0120	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.1254+825_1254+834d others(12): Show c.1254+825_1254+834dupTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(6): Show CAAAAAAAAAAAAA	3	a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097	4	HG01934.hp1 HG02717.hp1 HG03209.hp1 others(1): Show HG01934.hp1 HG02717.hp1 HG03209.hp1 HG03540.hp2	intron_variant	MODIFIER	c.1254+822_1254+834d others(15): Show c.1254+822_1254+834dupTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	2	a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0004g0112 a0001c0001t0004g0126	2	HG00735.hp1 HG01891.hp1 HG00735.hp1 HG01891.hp1	intron_variant	MODIFIER	c.1254+821_1254+834d others(16): Show c.1254+821_1254+834dupTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	4	a0001c0001t0001g0091 a0001c0001t0001g0131 a0001c0001t0003g0098 others(1): Show a0001c0001t0001g0091 a0001c0001t0001g0131 a0001c0001t0003g0098 a0001c0001t0005g0006	4	HG01167.hp1 HG01891.hp2 HG02809.hp1 others(1): Show HG01167.hp1 HG01891.hp2 HG02809.hp1 HG03486.hp2	intron_variant	MODIFIER	c.1254+820_1254+834d others(17): Show c.1254+820_1254+834dupTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	7	a0001c0001t0001g0014 a0001c0001t0001g0116 a0001c0001t0001g0121 others(4): Show a0001c0001t0001g0014 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0132 a0001c0001t0006g0129 a0001c0001t0016g0143 a0003c0005t0001g0128	7	HG01169.hp2 HG01243.hp1 HG01884.hp1 others(4): Show HG01169.hp2 HG01243.hp1 HG01884.hp1 HG02109.hp2 HG03041.hp1 HG03139.hp1 NA19075.hp1	intron_variant	MODIFIER	c.1254+819_1254+834d others(18): Show c.1254+819_1254+834dupTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	70	a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0018 others(67): Show a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0110 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0157 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0191 a0001c0001t0002g0193 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0005g0007 a0001c0001t0007g0009 a0001c0001t0009g0154 a0001c0001t0010g0197 a0001c0004t0002g0156 a0001c0006t0001g0045	72	HG00099.hp2 HG00323.hp2 HG00438.hp1 others(69): Show HG00099.hp2 HG00323.hp2 HG00438.hp1 HG00544.hp2 HG00609.hp1 HG00642.hp1 HG00741.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01169.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01981.hp1 HG01981.hp2 HG02040.hp1 HG02071.hp1 HG02080.hp1 HG02129.hp1 HG02155.hp2 HG02451.hp1 HG02602.hp1 HG02615.hp1 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03041.hp2 HG03491.hp1 HG03491.hp2 HG03579.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 NA18612.hp1 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18951.hp1 NA18951.hp2 NA18955.hp1 NA18959.hp1 NA18962.hp1 NA18970.hp1 NA18974.hp1 NA18977.hp1 NA18984.hp1 NA18989.hp1 NA18990.hp1 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19067.hp1 NA19082.hp1 NA19083.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1254+818_1254+834d others(19): Show c.1254+818_1254+834dupTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	44	a0001c0001t0001g0030 a0001c0001t0001g0049 a0001c0001t0001g0050 others(41): Show a0001c0001t0001g0030 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0069 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0130 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0002g0004 a0001c0001t0002g0147 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0192 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0006g0127 a0001c0001t0009g0173 a0001c0001t0010g0198 a0001c0001t0013g0137 a0001c0001t0015g0048 a0002c0007t0002g0174	45	HG00140.hp1 HG00280.hp1 HG00323.hp1 others(42): Show HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00438.hp2 HG00544.hp1 HG00621.hp1 HG00673.hp1 HG00735.hp2 HG00741.hp1 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01175.hp1 HG01175.hp2 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01928.hp1 HG02055.hp1 HG02074.hp1 HG02080.hp2 HG02155.hp1 HG02300.hp1 HG02615.hp2 HG03492.hp1 HG03516.hp2 HG03831.hp1 HG03831.hp2 HG04115.hp1 HG04204.hp1 HG04228.hp1 NA18948.hp1 NA18952.hp1 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18982.hp1 NA18986.hp1 NA18988.hp1 NA18994.hp1 NA19000.hp1 NA19012.hp1 NA19062.hp1 NA19063.hp1 NA19079.hp1	intron_variant	MODIFIER	c.1254+817_1254+834d others(20): Show c.1254+817_1254+834dupTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	25	a0001c0001t0001g0032 a0001c0001t0001g0057 a0001c0001t0001g0058 others(22): Show a0001c0001t0001g0032 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0118 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0002g0005 a0001c0001t0002g0155 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0194 a0001c0001t0007g0010 a0001c0001t0020g0150 a0001c0001t0022g0151 a0001c0003t0011g0142	26	HG00099.hp1 HG01515.hp1 HG01943.hp1 others(23): Show HG00099.hp1 HG01515.hp1 HG01943.hp1 HG01952.hp1 HG02056.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02257.hp2 HG02280.hp1 HG02559.hp1 HG02622.hp2 HG02647.hp1 HG03098.hp1 HG03490.hp1 HG03942.hp1 HG04199.hp1 NA18747.hp1 NA18960.hp1 NA18961.hp1 NA18983.hp1 NA19009.hp1 NA19060.hp1 NA19068.hp1 NA19085.hp1 NA20300.hp2	intron_variant	MODIFIER	c.1254+816_1254+834d others(21): Show c.1254+816_1254+834dupTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(13): Show CAAAAAAAAAAAAAAAAAAAA	12	a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 others(9): Show a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0086 a0001c0001t0001g0140 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0195 a0001c0001t0002g0205 a0001c0001t0018g0063 a0001c0001t0021g0206	12	HG00597.hp1 HG01192.hp1 HG02015.hp1 others(9): Show HG00597.hp1 HG01192.hp1 HG02015.hp1 HG02738.hp1 HG03453.hp1 HG03688.hp1 NA18985.hp1 NA18995.hp1 NA19004.hp1 NA19066.hp1 NA19070.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(22): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	7	a0001c0001t0001g0067 a0001c0001t0001g0113 a0001c0001t0001g0115 others(4): Show a0001c0001t0001g0067 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0117 a0001c0001t0002g0189 a0001c0001t0003g0122 a0001c0001t0012g0068	7	HG00597.hp2 HG02257.hp1 HG03453.hp2 others(4): Show HG00597.hp2 HG02257.hp1 HG03453.hp2 HG03540.hp1 NA18943.hp1 NA19007.hp1 NA20300.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(23): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	4	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0114 others(1): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0114 a0001c0001t0019g0099	4	HG02258.hp1 HG02886.hp1 HG03516.hp1 others(1): Show HG02258.hp1 HG02886.hp1 HG03516.hp1 NA18953.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(24): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0100 a0001c0001t0001g0101	2	HG02451.hp2 HG02572.hp1 HG02451.hp2 HG02572.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(25): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0003g0111 a0001c0001t0003g0111	1	HG02922.hp2 HG02922.hp2	intron_variant	MODIFIER	c.1254+834_1254+835i others(26): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0003g0123 a0001c0001t0003g0123	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(27): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0102 a0001c0002t0008g0094 a0001c0001t0001g0102 a0001c0002t0008g0094	2	HG02109.hp1 HG02922.hp1 HG02109.hp1 HG02922.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(28): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(20): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0103 a0001c0002t0008g0095 a0001c0001t0001g0103 a0001c0002t0008g0095	2	HG02486.hp1 NA19030.hp2 HG02486.hp1 NA19030.hp2	intron_variant	MODIFIER	c.1254+834_1254+835i others(29): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0002g0190 a0001c0001t0002g0190	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(31): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(28): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0093 a0001c0001t0001g0093	1	HG02280.hp2 HG02280.hp2	intron_variant	MODIFIER	c.1254+834_1254+835i others(37): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(29): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0104 a0001c0001t0001g0105	2	HG02559.hp2 NA21309.hp2 HG02559.hp2 NA21309.hp2	intron_variant	MODIFIER	c.1254+834_1254+835i others(38): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(30): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2	a0001c0001t0001g0106 a0001c0001t0003g0124 a0001c0001t0001g0106 a0001c0001t0003g0124	2	HG02965.hp1 HG03225.hp1 HG02965.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(39): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(32): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3	a0001c0001t0001g0092 a0001c0001t0001g0108 a0001c0001t0017g0107 a0001c0001t0001g0092 a0001c0001t0001g0108 a0001c0001t0017g0107	3	HG02622.hp1 HG02886.hp2 HG02895.hp1 HG02622.hp1 HG02886.hp2 HG02895.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(41): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(35): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0125 a0001c0001t0001g0125	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.1254+834_1254+835i others(44): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	C C	CAAAAAAA others(39): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0001t0001g0109 a0001c0001t0001g0109	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.1254+834_1254+835i others(48): Show c.1254+834_1254+835insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53410926	CA CA	C C	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.1254+834delT c.1254+834delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53410926
chrX:53411358	G G	A A	1	a0001c0001t0001g0083 a0001c0001t0001g0083	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.1254+403C>T c.1254+403C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53411358
chrX:53411603	C C	CA CA	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.1254+157dupT c.1254+157dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53411603
chrX:53411705	C C	T T	3	a0001c0001t0001g0032 a0001c0001t0002g0148 a0001c0001t0002g0157 a0001c0001t0001g0032 a0001c0001t0002g0148 a0001c0001t0002g0157	3	HG02622.hp2 NA20752.hp1 NA21309.hp1 HG02622.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.1254+56G>A c.1254+56G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	7/24	chrX	53411705
chrX:53412268	G G	A A	2	a0001c0001t0001g0110 a0001c0001t0001g0136 a0001c0001t0001g0110 a0001c0001t0001g0136	2	HG02055.hp1 HG02451.hp1 HG02055.hp1 HG02451.hp1	intron_variant	MODIFIER	c.855-15C>T c.855-15C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	5/24	chrX	53412268
chrX:53412738	T T	C C	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	HG02300.hp1 HG02300.hp1	intron_variant	MODIFIER	c.854+162A>G c.854+162A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	5/24	chrX	53412738
chrX:53413445	G G	A A	10	a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121 others(7): Show a0001c0001t0001g0091 a0001c0001t0001g0116 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0006g0119	10	HG01167.hp1 HG01169.hp2 HG01255.hp1 others(7): Show HG01167.hp1 HG01169.hp2 HG01255.hp1 HG02109.hp2 HG02257.hp1 HG02809.hp2 HG02922.hp2 HG02965.hp1 HG03130.hp1 HG03486.hp1	intron_variant	MODIFIER	c.412-10C>T c.412-10C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53413445
chrX:53413880	C C	G G	4	a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0002t0008g0094 others(1): Show a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0002t0008g0094 a0001c0002t0008g0095	4	HG02486.hp1 HG02886.hp1 HG02922.hp1 others(1): Show HG02486.hp1 HG02886.hp1 HG02922.hp1 HG03540.hp1	intron_variant	MODIFIER	c.412-445G>C c.412-445G>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53413880
chrX:53413985	G G	A A	1	a0001c0001t0002g0191 a0001c0001t0002g0191	1	HG00099.hp2 HG00099.hp2	intron_variant	MODIFIER	c.412-550C>T c.412-550C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53413985
chrX:53414062	C C	A A	1	a0001c0001t0001g0070 a0001c0001t0001g0070	1	HG02080.hp1 HG02080.hp1	intron_variant	MODIFIER	c.412-627G>T c.412-627G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53414062
chrX:53414075	CA CA	C C	194	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(191): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	199	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(196): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.412-641delT c.412-641delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53414075
chrX:53414075	CAA CAA	C C	1	a0001c0001t0001g0117 a0001c0001t0001g0117	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.412-642_412-641del others(2): Show c.412-642_412-641delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53414075
chrX:53414115	C C	CA CA	1	a0001c0001t0002g0201 a0001c0001t0002g0201	1	NA19083.hp1 NA19083.hp1	intron_variant	MODIFIER	c.411+642dupT c.411+642dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53414115
chrX:53414687	G G	C C	5	a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 others(2): Show a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075	5	NA18612.hp1 NA18967.hp1 NA18971.hp1 others(2): Show NA18612.hp1 NA18967.hp1 NA18971.hp1 NA19011.hp1 NA19079.hp1	intron_variant	MODIFIER	c.411+71C>G c.411+71C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	3/24	chrX	53414687
chrX:53414962	T T	C C	2	a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0113 a0001c0001t0001g0114	2	HG02886.hp1 HG03540.hp1 HG02886.hp1 HG03540.hp1	intron_variant	MODIFIER	c.298+19A>G c.298+19A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	2/24	chrX	53414962
chrX:53415427	C C	G G	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.110-258G>C c.110-258G>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415427
chrX:53415621	C C	T T	3	a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030	3	NA18988.hp1 NA18990.hp1 NA19005.hp1 NA18988.hp1 NA18990.hp1 NA19005.hp1	intron_variant	MODIFIER	c.110-452G>A c.110-452G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415621
chrX:53415622	GT GT	G G	2	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0076 a0001c0001t0001g0077	2	HG00673.hp1 NA19000.hp1 HG00673.hp1 NA19000.hp1	intron_variant	MODIFIER	c.110-454delA c.110-454delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415622
chrX:53415666	C C	CA CA	12	a0001c0001t0001g0083 a0001c0001t0001g0131 a0001c0001t0001g0132 others(9): Show a0001c0001t0001g0083 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010	12	HG01891.hp1 HG01891.hp2 HG02071.hp1 others(9): Show HG01891.hp1 HG01891.hp2 HG02071.hp1 HG02145.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp1 HG03041.hp2 HG03579.hp1 HG03831.hp2 NA18985.hp1 NA19009.hp1	intron_variant	MODIFIER	c.110-498dupT c.110-498dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415666
chrX:53415666	C C	CAA CAA	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.110-499_110-498dup others(2): Show c.110-499_110-498dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415666
chrX:53415666	CA CA	C C	6	a0001c0001t0001g0080 a0001c0001t0001g0093 a0001c0001t0001g0116 others(3): Show a0001c0001t0001g0080 a0001c0001t0001g0093 a0001c0001t0001g0116 a0001c0001t0001g0133 a0001c0001t0002g0155 a0001c0001t0009g0154	6	HG01169.hp2 HG02280.hp2 HG03490.hp1 others(3): Show HG01169.hp2 HG02280.hp2 HG03490.hp1 HG03491.hp2 HG03516.hp2 NA18984.hp1	intron_variant	MODIFIER	c.110-498delT c.110-498delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415666
chrX:53415831	T T	TA TA	199	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(196): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	204	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(201): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.110-663dupT c.110-663dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415831
chrX:53415843	G G	GA GA	12	a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0087 others(9): Show a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0087 a0001c0001t0001g0115 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0003c0005t0001g0128	12	HG01884.hp1 HG02055.hp1 HG02280.hp1 others(9): Show HG01884.hp1 HG02055.hp1 HG02280.hp1 HG02559.hp1 HG03453.hp2 HG03516.hp2 HG03579.hp1 NA18945.hp1 NA19012.hp1 NA19043.hp1 NA19067.hp1 NA20129.hp2	intron_variant	MODIFIER	c.110-675dupT c.110-675dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415843
chrX:53415843	G G	GAA GAA	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.110-676_110-675dup others(2): Show c.110-676_110-675dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415843
chrX:53415843	GA GA	G G	3	a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026	3	HG03017.hp1 NA18962.hp1 NA18974.hp1 HG03017.hp1 NA18962.hp1 NA18974.hp1	intron_variant	MODIFIER	c.110-675delT c.110-675delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415843
chrX:53415985	C C	T T	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.110-816G>A c.110-816G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53415985
chrX:53416167	G G	A A	2	a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0081 a0001c0001t0001g0083	2	HG03831.hp2 HG04204.hp1 HG03831.hp2 HG04204.hp1	intron_variant	MODIFIER	c.110-998C>T c.110-998C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416167
chrX:53416302	C C	CA CA	2	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0007g0009 a0001c0001t0007g0010	2	HG02559.hp1 HG03579.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.110-1134dupT c.110-1134dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416302
chrX:53416310	A A	T T	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.110-1141T>A c.110-1141T>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416310
chrX:53416315	T T	A A	1	a0001c0001t0002g0147 a0001c0001t0002g0147	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.110-1146A>T c.110-1146A>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416315
chrX:53416327	AAATAAT AAATAAT	A A	1	a0001c0001t0002g0196 a0001c0001t0002g0196	1	HG02155.hp1 HG02155.hp1	intron_variant	MODIFIER	c.110-1164_110-1159d others(8): Show c.110-1164_110-1159delATTATT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416327
chrX:53416670	A A	G G	2	a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0152 a0001c0001t0002g0153	2	HG02155.hp2 NA18942.hp1 HG02155.hp2 NA18942.hp1	intron_variant	MODIFIER	c.110-1501T>C c.110-1501T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416670
chrX:53416793	G G	A A	2	a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0010g0197 a0001c0001t0010g0198	2	HG00642.hp1 HG01175.hp2 HG00642.hp1 HG01175.hp2	intron_variant	MODIFIER	c.110-1624C>T c.110-1624C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53416793
chrX:53417189	C C	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.110-2020G>A c.110-2020G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53417189
chrX:53417300	C C	T T	50	a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 others(47): Show a0001c0001t0001g0015 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0017g0107 a0001c0001t0019g0099 a0001c0002t0008g0094 a0001c0002t0008g0095 a0003c0005t0001g0128	51	HG00735.hp1 HG00738.hp1 HG01167.hp1 others(48): Show HG00735.hp1 HG00738.hp1 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG01255.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG04228.hp1 NA18522.hp1 NA19030.hp2 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.110-2131G>A c.110-2131G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53417300
chrX:53417551	C C	CA CA	7	a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0199 others(4): Show a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0208 a0001c0001t0021g0206	7	HG00140.hp1 HG02738.hp1 HG03831.hp1 others(4): Show HG00140.hp1 HG02738.hp1 HG03831.hp1 HG03831.hp2 NA19062.hp1 NA19082.hp1 NA19083.hp1	intron_variant	MODIFIER	c.110-2383dupT c.110-2383dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53417551
chrX:53417551	CA CA	C C	8	a0001c0001t0001g0020 a0001c0001t0001g0116 a0001c0001t0002g0146 others(5): Show a0001c0001t0001g0020 a0001c0001t0001g0116 a0001c0001t0002g0146 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0020g0150 a0001c0001t0022g0151 a0003c0005t0001g0128	8	HG01074.hp1 HG01169.hp2 HG01884.hp1 others(5): Show HG01074.hp1 HG01169.hp2 HG01884.hp1 HG03491.hp1 HG03704.hp1 NA18747.hp1 NA19085.hp1 NA21309.hp1	intron_variant	MODIFIER	c.110-2383delT c.110-2383delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53417551
chrX:53418165	C C	T T	6	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 others(3): Show a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	6	HG02145.hp1 HG02280.hp1 HG02559.hp1 others(3): Show HG02145.hp1 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03579.hp1	intron_variant	MODIFIER	c.110-2996G>A c.110-2996G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53418165
chrX:53418174	T T	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18951.hp1 NA18951.hp1	intron_variant	MODIFIER	c.110-3005A>G c.110-3005A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53418174
chrX:53419019	C C	T T	1	a0001c0001t0002g0147 a0001c0001t0002g0147	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.109+3473G>A c.109+3473G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419019
chrX:53419040	C C	CA CA	19	a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 others(16): Show a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0006g0119 a0001c0001t0021g0206	19	HG00438.hp1 HG01169.hp2 HG01255.hp1 others(16): Show HG00438.hp1 HG01169.hp2 HG01255.hp1 HG01346.hp2 HG01891.hp1 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02965.hp1 HG03041.hp2 HG03130.hp1 HG03486.hp1 NA18995.hp1 NA19067.hp1 NA20300.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.109+3451dupT c.109+3451dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419040
chrX:53419040	C C	CAA CAA	1	a0001c0001t0005g0008 a0001c0001t0005g0008	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.109+3450_109+3451d others(4): Show c.109+3450_109+3451dupTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419040
chrX:53419040	CA CA	C C	70	a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 others(67): Show a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0138 a0001c0001t0001g0141 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0006g0127 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	74	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(71): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02615.hp2 HG02698.hp1 HG03098.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG04115.hp1 NA18522.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18965.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.109+3451delT c.109+3451delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419040
chrX:53419040	CAA CAA	C C	1	a0001c0001t0002g0146 a0001c0001t0002g0146	1	HG01074.hp1 HG01074.hp1	intron_variant	MODIFIER	c.109+3450_109+3451d others(4): Show c.109+3450_109+3451delTT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419040
chrX:53419083	A A	G G	1	a0001c0001t0001g0092 a0001c0001t0001g0092	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.109+3409T>C c.109+3409T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419083
chrX:53419123	G G	A A	1	a0001c0001t0001g0088 a0001c0001t0001g0088	1	HG01346.hp2 HG01346.hp2	intron_variant	MODIFIER	c.109+3369C>T c.109+3369C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419123
chrX:53419173	C C	G G	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.109+3319G>C c.109+3319G>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419173
chrX:53419196	A A	G G	68	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(65): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.109+3296T>C c.109+3296T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419196
chrX:53419295	C C	T T	3	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	intron_variant	MODIFIER	c.109+3197G>A c.109+3197G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419295
chrX:53419536	A A	AG AG	6	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 others(3): Show a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	6	HG02145.hp1 HG02280.hp1 HG02559.hp1 others(3): Show HG02145.hp1 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03579.hp1	intron_variant	MODIFIER	c.109+2955_109+2956i others(3): Show c.109+2955_109+2956insC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419536
chrX:53419697	G G	A A	3	a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	3	HG02280.hp1 HG02559.hp1 HG03579.hp1 HG02280.hp1 HG02559.hp1 HG03579.hp1	intron_variant	MODIFIER	c.109+2795C>T c.109+2795C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419697
chrX:53419748	C C	T T	68	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 others(65): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0004t0002g0156 a0002c0007t0002g0174	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00741.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01109.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG01981.hp2 HG02027.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02698.hp1 HG02738.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03704.hp1 HG03831.hp1 HG04115.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18951.hp2 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19060.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19089.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1	intron_variant	MODIFIER	c.109+2744G>A c.109+2744G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419748
chrX:53419823	C C	CA CA	12	a0001c0001t0001g0089 a0001c0001t0001g0130 a0001c0001t0001g0131 others(9): Show a0001c0001t0001g0089 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0013g0137 a0003c0005t0001g0128	12	HG00323.hp1 HG01106.hp1 HG01243.hp1 others(9): Show HG00323.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02615.hp2 HG03041.hp1 HG03516.hp2 HG04228.hp1 NA19043.hp1 NA20129.hp2	intron_variant	MODIFIER	c.109+2668dupT c.109+2668dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419823
chrX:53419823	CA CA	C C	1	a0001c0001t0001g0091 a0001c0001t0001g0091	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.109+2668delT c.109+2668delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419823
chrX:53419890	C C	A A	1	a0001c0001t0001g0090 a0001c0001t0001g0090	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.109+2602G>T c.109+2602G>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53419890
chrX:53420015	C C	T T	3	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008	3	HG02145.hp1 HG02809.hp1 HG03041.hp2 HG02145.hp1 HG02809.hp1 HG03041.hp2	intron_variant	MODIFIER	c.109+2477G>A c.109+2477G>A	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420015
chrX:53420056	T T	C C	206	a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 others(203): Show a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0004 a0001c0001t0002g0005 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0160 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0164 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0169 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0002g0196 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0009g0154 a0001c0001t0009g0173 a0001c0001t0010g0197 a0001c0001t0010g0198 a0001c0001t0012g0068 a0001c0001t0013g0137 a0001c0001t0015g0048 a0001c0001t0016g0143 a0001c0001t0017g0107 a0001c0001t0018g0063 a0001c0001t0019g0099 a0001c0001t0020g0150 a0001c0001t0021g0206 a0001c0001t0022g0151 a0001c0002t0008g0094 a0001c0002t0008g0095 a0001c0003t0011g0142 a0001c0004t0002g0156 a0001c0006t0001g0045 a0002c0007t0002g0174 a0003c0005t0001g0128	211	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(208): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19075.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.109+2436A>G c.109+2436A>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420056
chrX:53420404	G G	C C	48	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 others(45): Show a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0121 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0003g0098 a0001c0001t0003g0111 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0004g0001 a0001c0001t0004g0096 a0001c0001t0004g0097 a0001c0001t0004g0112 a0001c0001t0004g0126 a0001c0001t0006g0119 a0001c0001t0006g0127 a0001c0001t0006g0129 a0001c0001t0013g0137 a0001c0001t0017g0107 a0001c0001t0019g0099 a0001c0002t0008g0094 a0001c0002t0008g0095 a0003c0005t0001g0128	49	HG00323.hp1 HG00735.hp1 HG01167.hp1 others(46): Show HG00323.hp1 HG00735.hp1 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG01255.hp1 HG01884.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG02055.hp1 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG04228.hp1 NA19030.hp2 NA19043.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.109+2088C>G c.109+2088C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420404
chrX:53420507	G G	C C	2	a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0207 a0001c0001t0002g0208	2	NA18955.hp1 NA19082.hp1 NA18955.hp1 NA19082.hp1	intron_variant	MODIFIER	c.109+1985C>G c.109+1985C>G	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420507
chrX:53420521	C C	CA CA	4	a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 others(1): Show a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0002g0208	4	HG02647.hp1 HG03098.hp1 HG03453.hp1 others(1): Show HG02647.hp1 HG03098.hp1 HG03453.hp1 NA19082.hp1	intron_variant	MODIFIER	c.109+1970dupT c.109+1970dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420521
chrX:53420521	CA CA	C C	1	a0001c0001t0002g0145 a0001c0001t0002g0145	1	NA20129.hp1 NA20129.hp1	intron_variant	MODIFIER	c.109+1970delT c.109+1970delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420521
chrX:53420532	A A	AG AG	1	a0001c0001t0001g0011 a0001c0001t0001g0011	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.109+1959_109+1960i others(3): Show c.109+1959_109+1960insC	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420532
chrX:53420915	TA TA	T T	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.109+1576delT c.109+1576delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53420915
chrX:53421136	CT CT	C C	1	a0001c0001t0001g0141 a0001c0001t0001g0141	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.109+1355delA c.109+1355delA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421136
chrX:53421402	G G	GT GT	1	a0001c0001t0001g0141 a0001c0001t0001g0141	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.109+1089dupA c.109+1089dupA	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421402
chrX:53421531	CA CA	C C	1	a0001c0001t0001g0141 a0001c0001t0001g0141	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.109+960delT c.109+960delT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421531
chrX:53421784	C C	CA CA	1	a0001c0001t0001g0141 a0001c0001t0001g0141	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.109+707dupT c.109+707dupT	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421784
chrX:53421873	A A	G G	6	a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 others(3): Show a0001c0001t0005g0006 a0001c0001t0005g0007 a0001c0001t0005g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0003t0011g0142	6	HG02145.hp1 HG02280.hp1 HG02559.hp1 others(3): Show HG02145.hp1 HG02280.hp1 HG02559.hp1 HG02809.hp1 HG03041.hp2 HG03579.hp1	intron_variant	MODIFIER	c.109+619T>C c.109+619T>C	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421873
chrX:53421956	G G	A A	1	a0001c0003t0011g0142 a0001c0003t0011g0142	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.109+536C>T c.109+536C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53421956
chrX:53422170	G G	A A	2	a0001c0001t0001g0144 a0001c0001t0016g0143 a0001c0001t0001g0144 a0001c0001t0016g0143	2	NA19075.hp1 NA20805.hp1 NA19075.hp1 NA20805.hp1	intron_variant	MODIFIER	c.109+322C>T c.109+322C>T	SMC1A	ENSG00000072501.19	transcript	ENST00000322213.9	protein_coding	1/24	chrX	53422170

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JoGo Online Haplotype Explorer SMC1A_chrX_53369149_53427654

JoGo Local Haplotype Explorer (on iGV) SMC1A_chrX_53369149_53427654

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 7)

TTranscript Level Haplotype Info (Total: 22)

GGenebody Level Haplotype Info (Total: 208)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 7)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 26)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 208)

Haplotype Details by Sample (Haploid Level) (Total: 213)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (Exon) (Total: 26)

GGenebody Level Haplotype Variants (Intron) (Total: 365)

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Annotation (Repeats)

Annotation (SNP Array)