Joint Open Genome and Omics Platform (JoGo)

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geneid	7216
ensemblid	ENSG00000067445.22
hgncid	12326
symbol	TRO
name	trophinin
refseq_nuc	NM_001039705.3
refseq_prot	NP_001034794.1
ensembl_nuc	ENST00000173898.12
ensembl_prot	ENSP00000173898.7
mane_status	MANE Select
chr	chrX
start	54920824
end	54931431
strand	+
ver	v1.2
region	chrX:54920824-54931431
region5000	chrX:54915824-54936431
regionname0	TRO_chrX_54920824_54931431
regionname5000	TRO_chrX_54915824_54936431

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1431	284	69	49	122	11	31	95	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0002	0/0	1431	8	7	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0003	0/0	1431	5	0	0	5	0	0	5	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0004	0/0	34	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0005	0/0	324	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0006	0/0	1431	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0007	0/0	449	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0008	0/0	1431	1	0	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0009	0/0	1238	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0010	0/0	1331	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0011	0/0	1431	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0012	0/0	1431	1	1	0	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0013	0/0	575	1	0	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0014	0/0	1431	1	1	0	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0015	0/0	267	1	0	0	1	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0016	0/0	1431	1	1	0	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	4296	274	67	48	116	11	30	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0002	0/0	4296	8	7	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0003	0/0	4296	5	0	0	5	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0004	0/0	4296	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0005	0/0	4297	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0006	0/0	4296	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0007	0/0	4296	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0008	0/0	4297	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0009	0/0	4295	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0010	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0011	0/0	4295	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0012	0/0	4294	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0013	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0014	0/0	4300	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0015	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0016	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0017	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0018	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0019	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0020	0/0	4296	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0021	0/0	4300	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0022	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
c0023	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	339	299	70	52	133	11	31	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
t0002	0/0	339	6	6	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
t0003	0/0	339	3	3	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
t0004	0/0	338	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
t0005	0/0	342	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	105	0	20	68	5	12	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0002	0/1	94	20	18	41	2	12	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0003	1/0	32	20	3	7	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0004	0/0	12	0	4	2	3	3	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0005	0/0	10	9	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0006	0/0	8	7	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0007	0/0	7	7	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0008	0/0	6	6	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0009	0/0	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0010	0/0	2	0	2	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0011	0/0	2	2	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0012	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0013	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0014	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0015	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0016	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0017	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0018	0/0	1	0	0	0	1	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0019	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0020	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0021	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0022	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0023	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0024	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0025	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0026	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0027	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0028	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0029	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0030	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0031	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0032	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0033	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0034	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0035	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0036	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0037	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0038	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
g0039	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	4296	274	67	48	116	11	30	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0004	0/0	4296	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0006	0/0	4296	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0007	0/0	4296	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0015	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0016	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0018	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0019	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0002c0002	0/0	4296	8	7	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0003c0003	0/0	4296	5	0	0	5	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0004c0005	0/0	4297	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0005c0009	0/0	4295	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0006c0010	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0007c0021	0/0	4300	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0008c0020	0/0	4296	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0009c0012	0/0	4294	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0010c0014	0/0	4300	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0011c0017	0/0	4296	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0012c0013	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0013c0011	0/0	4295	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0014c0022	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0015c0008	0/0	4297	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0016c0023	0/0	4296	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	4634	265	58	48	116	11	30	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0001t0002	0/0	4634	6	6	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0001t0003	0/0	4634	3	3	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0004t0001	0/0	4634	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0006t0001	0/0	4634	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0007t0001	0/0	4634	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0015t0001	0/0	4634	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0016t0001	0/0	4634	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0018t0001	0/0	4634	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0001c0019t0001	0/0	4634	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0002c0002t0001	0/0	4634	8	7	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0003c0003t0001	0/0	4634	5	0	0	5	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0004c0005t0005	0/0	4638	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0005c0009t0001	0/0	4633	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0006c0010t0001	0/0	4634	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0007c0021t0001	0/0	4638	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0008c0020t0001	0/0	4634	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0009c0012t0004	0/0	4631	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0010c0014t0001	0/0	4638	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0011c0017t0001	0/0	4634	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0012c0013t0001	0/0	4634	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0013c0011t0001	0/0	4633	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0014c0022t0001	0/0	4634	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0015c0008t0001	0/0	4635	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431
a0016c0023t0001	0/0	4634	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	copy fasta	chrX	54915824	54936431

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	97	0	20	61	5	11	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0002	0/1	84	18	17	34	2	12	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0003	1/0	25	13	3	7	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0004	0/0	11	0	3	2	3	3	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0005	0/0	10	9	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0007	0/0	7	7	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0008	0/0	3	3	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0009	0/0	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0010	0/0	2	0	2	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0011	0/0	2	2	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0012	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0015	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0018	0/0	1	0	0	0	1	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0021	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0025	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0026	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0027	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0029	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0030	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0032	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0037	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0002g0003	0/0	5	5	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0002g0028	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0001t0003g0008	0/0	3	3	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0004t0001g0002	0/0	4	0	0	4	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0006t0001g0002	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0007t0001g0001	0/0	1	0	0	0	0	1	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0015t0001g0001	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0016t0001g0003	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0018t0001g0002	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0001c0019t0001g0002	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0002c0002t0001g0006	0/0	8	7	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0003c0003t0001g0001	0/0	5	0	0	5	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0004c0005t0005g0013	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0005c0009t0001g0019	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0006c0010t0001g0035	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0007c0021t0001g0001	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0008c0020t0001g0004	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0009c0012t0004g0022	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0010c0014t0001g0002	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0011c0017t0001g0002	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0012c0013t0001g0020	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0013c0011t0001g0038	0/0	1	0	1	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0014c0022t0001g0003	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0015c0008t0001g0036	0/0	1	0	0	1	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
a0016c0023t0001g0002	0/0	1	1	0	0	0	0	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0004	EUR	GBR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00280	hp1	a0001	c0001	t0001	g0002	EUR	FIN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00323	hp2	a0001	c0001	t0001	g0004	EUR	FIN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00558	hp1	a0001	c0001	t0001	g0003	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00597	hp1	a0001	c0001	t0001	g0003	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00597	hp2	a0001	c0001	t0001	g0009	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00609	hp1	a0001	c0001	t0001	g0003	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00639	hp2	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00642	hp1	a0001	c0001	t0001	g0004	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00673	hp1	a0001	c0001	t0001	g0004	EAS	CHS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00735	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG00738	hp1	a0001	c0001	t0001	g0029	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01070	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01070	hp2	a0001	c0001	t0001	g0010	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01071	hp1	a0001	c0001	t0001	g0010	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01071	hp2	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01081	hp1	a0001	c0001	t0001	g0003	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01099	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01106	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01167	hp1	a0001	c0001	t0001	g0003	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01168	hp1	a0013	c0011	t0001	g0038	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01168	hp2	a0008	c0020	t0001	g0004	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01169	hp2	a0001	c0001	t0001	g0003	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01192	hp1	a0001	c0006	t0001	g0002	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01243	hp1	a0001	c0001	t0001	g0005	AMR	PUR	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01255	hp1	a0002	c0002	t0001	g0006	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01257	hp2	a0001	c0001	t0001	g0004	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01346	hp2	a0001	c0001	t0001	g0002	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01361	hp1	a0001	c0001	t0001	g0002	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01433	hp1	a0001	c0001	t0001	g0004	AMR	CLM	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01515	hp1	a0001	c0001	t0001	g0004	EUR	IBS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01516	hp1	a0001	c0001	t0001	g0018	EUR	IBS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01884	hp1	a0001	c0001	t0001	g0027	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01884	hp2	a0001	c0001	t0001	g0002	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01891	hp1	a0001	c0001	t0001	g0007	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01891	hp2	a0001	c0001	t0001	g0011	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01975	hp2	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01981	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01993	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02027	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02055	hp1	a0001	c0016	t0001	g0003	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02056	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02071	hp1	a0001	c0018	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02080	hp1	a0001	c0001	t0001	g0016	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02083	hp1	a0001	c0001	t0001	g0009	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02132	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02135	hp1	a0001	c0001	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02145	hp1	a0001	c0001	t0001	g0014	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02148	hp2	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02155	hp2	a0001	c0001	t0001	g0039	EAS	CDX	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02165	hp1	a0001	c0001	t0001	g0002	EAS	CDX	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02257	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02257	hp2	a0001	c0001	t0001	g0008	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02258	hp1	a0001	c0001	t0001	g0005	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02273	hp1	a0001	c0001	t0001	g0026	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02273	hp2	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02280	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02280	hp2	a0001	c0001	t0001	g0005	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02293	hp1	a0001	c0001	t0001	g0002	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02451	hp1	a0001	c0001	t0001	g0002	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02451	hp2	a0001	c0019	t0001	g0002	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02523	hp1	a0001	c0001	t0001	g0024	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02523	hp2	a0001	c0001	t0001	g0002	EAS	KHV	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02572	hp1	a0001	c0001	t0001	g0007	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02602	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02615	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02615	hp2	a0001	c0001	t0001	g0030	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02622	hp1	a0001	c0001	t0001	g0012	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02622	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02630	hp1	a0001	c0001	t0001	g0007	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02630	hp2	a0001	c0001	t0001	g0021	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02717	hp1	a0001	c0001	t0001	g0005	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02723	hp1	a0001	c0001	t0003	g0008	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02723	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02735	hp1	a0001	c0001	t0001	g0025	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02809	hp1	a0001	c0001	t0001	g0007	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02809	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02818	hp1	a0001	c0001	t0001	g0005	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02818	hp2	a0001	c0001	t0002	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02886	hp1	a0001	c0001	t0002	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02886	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02895	hp1	a0001	c0001	t0003	g0008	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02896	hp1	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02896	hp2	a0001	c0001	t0001	g0002	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02897	hp1	a0001	c0001	t0003	g0008	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02897	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02922	hp1	a0002	c0002	t0001	g0006	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02922	hp2	a0001	c0001	t0001	g0005	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02965	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02970	hp1	a0002	c0002	t0001	g0006	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02970	hp2	a0012	c0013	t0001	g0020	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02976	hp1	a0001	c0001	t0001	g0003	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02976	hp2	a0001	c0001	t0001	g0007	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03017	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03041	hp1	a0001	c0001	t0001	g0002	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03041	hp2	a0001	c0001	t0001	g0011	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03098	hp1	a0001	c0001	t0002	g0003	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03130	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03195	hp1	a0001	c0001	t0001	g0002	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03195	hp2	a0002	c0002	t0001	g0006	AFR	ESN	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03209	hp1	a0001	c0001	t0002	g0028	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03225	hp1	a0001	c0001	t0001	g0003	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03239	hp2	a0001	c0001	t0001	g0032	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03453	hp1	a0001	c0001	t0001	g0037	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03453	hp2	a0001	c0001	t0001	g0007	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03486	hp1	a0002	c0002	t0001	g0006	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03486	hp2	a0001	c0001	t0001	g0003	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03490	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03491	hp1	a0001	c0001	t0001	g0017	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03491	hp2	a0001	c0001	t0001	g0004	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03540	hp1	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03540	hp2	a0001	c0001	t0001	g0003	AFR	GWD	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03579	hp1	a0001	c0001	t0002	g0003	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03654	hp1	a0001	c0001	t0001	g0002	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03688	hp1	a0001	c0001	t0001	g0002	SAS	STU	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03704	hp1	a0001	c0001	t0001	g0003	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03704	hp2	a0001	c0007	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03831	hp1	a0001	c0001	t0001	g0002	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03831	hp2	a0001	c0001	t0001	g0002	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03834	hp1	a0001	c0001	t0001	g0002	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03927	hp1	a0001	c0001	t0001	g0004	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03927	hp2	a0001	c0001	t0001	g0004	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04115	hp1	a0001	c0001	t0001	g0002	SAS	STU	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04184	hp1	a0001	c0001	t0001	g0002	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04184	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04199	hp1	a0001	c0001	t0001	g0002	SAS	STU	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18522	hp1	a0001	c0001	t0001	g0003	AFR	YRI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18906	hp1	a0001	c0001	t0001	g0007	AFR	YRI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18906	hp2	a0014	c0022	t0001	g0003	AFR	YRI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18939	hp2	a0001	c0004	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18941	hp1	a0003	c0003	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18941	hp2	a0001	c0001	t0001	g0034	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18945	hp1	a0006	c0010	t0001	g0035	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18948	hp1	a0001	c0015	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18949	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18949	hp2	a0001	c0001	t0001	g0003	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18950	hp1	a0001	c0001	t0001	g0009	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18953	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18959	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18963	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18964	hp1	a0001	c0001	t0001	g0009	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18968	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18968	hp2	a0001	c0001	t0001	g0003	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18969	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18972	hp1	a0003	c0003	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18972	hp2	a0001	c0001	t0001	g0004	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18973	hp1	a0001	c0001	t0001	g0015	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18975	hp1	a0001	c0001	t0001	g0023	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18977	hp1	a0003	c0003	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18978	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18978	hp2	a0010	c0014	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18979	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18980	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18982	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18983	hp1	a0001	c0004	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18984	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18986	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18988	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18989	hp1	a0009	c0012	t0004	g0022	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18990	hp1	a0001	c0001	t0001	g0031	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18992	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18992	hp2	a0015	c0008	t0001	g0036	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18997	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18999	hp1	a0011	c0017	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19000	hp1	a0001	c0004	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19001	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19001	hp2	a0003	c0003	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19002	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19002	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19003	hp2	a0005	c0009	t0001	g0019	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19005	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19010	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19010	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19012	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19030	hp1	a0001	c0001	t0001	g0003	AFR	LWK	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19030	hp2	a0001	c0001	t0001	g0008	AFR	LWK	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19043	hp1	a0001	c0001	t0001	g0002	AFR	LWK	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19055	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19057	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19059	hp1	a0004	c0005	t0005	g0013	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19059	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19063	hp1	a0001	c0001	t0001	g0033	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19074	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19078	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19078	hp2	a0001	c0004	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19079	hp1	a0003	c0003	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19080	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19080	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19082	hp1	a0007	c0021	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19085	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19086	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19088	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19240	hp1	a0001	c0001	t0001	g0003	AFR	YRI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA19240	hp2	a0016	c0023	t0001	g0002	AFR	YRI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20129	hp1	a0002	c0002	t0001	g0006	AFR	ASW	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20129	hp2	a0001	c0001	t0002	g0003	AFR	ASW	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20752	hp1	a0001	c0001	t0001	g0002	EUR	TSI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02109	hp1	a0001	c0001	t0001	g0008	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02109	hp2	a0001	c0001	t0001	g0005	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02486	hp1	a0001	c0001	t0001	g0005	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02559	hp1	a0001	c0001	t0001	g0005	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG02559	hp2	a0002	c0002	t0001	g0006	AFR	ACB	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG03471	hp1	a0002	c0002	t0001	g0006	AFR	MSL	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG06807	hp1	a0001	c0001	t0001	g0005	AFR	USA	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
HG06807	hp2	a0001	c0001	t0001	g0002	AFR	USA	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA18955	hp1	a0001	c0001	t0001	g0002	EAS	JPT	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20300	hp1	a0001	c0001	t0001	g0002	AFR	USA	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA20300	hp2	a0001	c0001	t0001	g0002	AFR	USA	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA21309	hp1	a0001	c0001	t0001	g0002	AFR	LWK	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
NA21309	hp2	a0001	c0001	t0001	g0002	AFR	LWK	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0002	REF	REF	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0003	REF	REF	TRO_chrX_54915824_54936431	TRO	chrX	54915824	54936431

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:54922201	A A	AG AG	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	splice_region_variant	LOW	c.-44dupG c.-44dupG		TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/13				INFO_REALIGN_3_PRIME	chrX	54922201
chrX:54922274	A A	AG AG	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.31dupG c.31dupG	p.Val11fs p.Val11fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/13	131/4634	32/4296	11/1431	INFO_REALIGN_3_PRIME	chrX	54922274
chrX:54922725	C C	T T	1	a0016 a0016	1	NA19240.hp2 NA19240.hp2	missense_variant	MODERATE	c.193C>T c.193C>T	p.Arg65Trp p.Arg65Trp	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	292/4634	193/4296	65/1431		chrX	54922725
chrX:54922745	CA CA	C C	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.215delA c.215delA	p.Lys72fs p.Lys72fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	314/4634	215/4296	72/1431	INFO_REALIGN_3_PRIME	chrX	54922745
chrX:54922772	TA TA	T T	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.242delA c.242delA	p.Lys81fs p.Lys81fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	341/4634	242/4296	81/1431	INFO_REALIGN_3_PRIME	chrX	54922772
chrX:54922821	A A	AC AC	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.291dupC c.291dupC	p.Asn98fs p.Asn98fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	391/4634	292/4296	98/1431	INFO_REALIGN_3_PRIME	chrX	54922821
chrX:54922852	TA TA	T T	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.323delA c.323delA	p.Asn108fs p.Asn108fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	422/4634	323/4296	108/1431	INFO_REALIGN_3_PRIME	chrX	54922852
chrX:54923217	AC AC	A A	1	a0015 a0015	1	NA18992.hp2 NA18992.hp2	frameshift_variant	HIGH	c.688delC c.688delC	p.His230fs p.His230fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	787/4634	688/4296	230/1431	INFO_REALIGN_3_PRIME	chrX	54923217
chrX:54923228	T T	TA TA	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.697dupA c.697dupA	p.Thr233fs p.Thr233fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	797/4634	698/4296	233/1431	INFO_REALIGN_3_PRIME	chrX	54923228
chrX:54923269	A A	G G	1	a0014 a0014	1	NA18906.hp2 NA18906.hp2	missense_variant	MODERATE	c.737A>G c.737A>G	p.His246Arg p.His246Arg	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	836/4634	737/4296	246/1431		chrX	54923269
chrX:54923454	AG AG	A A	1	a0005 a0005	1	NA19003.hp2 NA19003.hp2	frameshift_variant	HIGH	c.926delG c.926delG	p.Gly309fs p.Gly309fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	1025/4634	926/4296	309/1431	INFO_REALIGN_3_PRIME	chrX	54923454
chrX:54923539	G G	A A	1	a0006 a0006	1	NA18945.hp1 NA18945.hp1	missense_variant	MODERATE	c.1007G>A c.1007G>A	p.Arg336Gln p.Arg336Gln	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	1106/4634	1007/4296	336/1431		chrX	54923539
chrX:54923622	G G	GC GC	1	a0015 a0015	1	NA18992.hp2 NA18992.hp2	frameshift_variant	HIGH	c.1093dupC c.1093dupC	p.Gln365fs p.Gln365fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	1193/4634	1094/4296	365/1431	INFO_REALIGN_3_PRIME	chrX	54923622
chrX:54923658	A A	T T	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	missense_variant	MODERATE	c.1126A>T c.1126A>T	p.Ser376Cys p.Ser376Cys	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	1225/4634	1126/4296	376/1431		chrX	54923658
chrX:54923689	T T	TC TC	1	a0004 a0004	1	NA19059.hp1 NA19059.hp1	frameshift_variant	HIGH	c.1159dupC c.1159dupC	p.Gln387fs p.Gln387fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	1259/4634	1160/4296	387/1431	INFO_REALIGN_3_PRIME	chrX	54923689
chrX:54924497	G G	GGATC GGATC	1	a0007 a0007	1	NA19082.hp1 NA19082.hp1	frameshift_variant	HIGH	c.1284_1287dupGATC c.1284_1287dupGATC	p.Pro430fs p.Pro430fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	4/13	1387/4634	1288/4296	430/1431	INFO_REALIGN_3_PRIME	chrX	54924497
chrX:54925031	C C	T T	1	a0008 a0008	1	HG01168.hp2 HG01168.hp2	missense_variant	MODERATE	c.1448C>T c.1448C>T	p.Pro483Leu p.Pro483Leu	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	6/13	1547/4634	1448/4296	483/1431		chrX	54925031
chrX:54925683	C C	T T	1	a0003 a0003	5	NA18941.hp1 NA18972.hp1 NA18977.hp1 others(2): Show NA18941.hp1 NA18972.hp1 NA18977.hp1 NA19001.hp2 NA19079.hp1	missense_variant&splice_region_variant	MODERATE	c.1577C>T c.1577C>T	p.Thr526Met p.Thr526Met	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/13	1676/4634	1577/4296	526/1431		chrX	54925683
chrX:54926619	G G	GC GC	1	a0015 a0015	1	NA18992.hp2 NA18992.hp2	frameshift_variant&splice_region_variant	HIGH	c.1697dupC c.1697dupC	p.Gly567fs p.Gly567fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	9/13	1797/4634	1698/4296	566/1431	INFO_REALIGN_3_PRIME	chrX	54926619
chrX:54927061	TG TG	T T	1	a0013 a0013	1	HG01168.hp1 HG01168.hp1	frameshift_variant	HIGH	c.1723delG c.1723delG	p.Glu575fs p.Glu575fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/13	1822/4634	1723/4296	575/1431	INFO_REALIGN_3_PRIME	chrX	54927061
chrX:54928803	AG AG	A A	1	a0015 a0015	1	NA18992.hp2 NA18992.hp2	frameshift_variant	HIGH	c.2081delG c.2081delG	p.Gly694fs p.Gly694fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2180/4634	2081/4296	694/1431	INFO_REALIGN_3_PRIME	chrX	54928803
chrX:54929077	TC TC	T T	1	a0009 a0009	1	NA18989.hp1 NA18989.hp1	frameshift_variant	HIGH	c.2355delC c.2355delC	p.Ser786fs p.Ser786fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2454/4634	2355/4296	785/1431	INFO_REALIGN_3_PRIME	chrX	54929077
chrX:54929120	A A	C C	1	a0002 a0002	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	missense_variant	MODERATE	c.2396A>C c.2396A>C	p.His799Pro p.His799Pro	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2495/4634	2396/4296	799/1431		chrX	54929120
chrX:54929219	G G	GA GA	1	a0009 a0009	1	NA18989.hp1 NA18989.hp1	frameshift_variant	HIGH	c.2495_2496insA c.2495_2496insA	p.Ser832fs p.Ser832fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2595/4634	2496/4296	832/1431		chrX	54929219
chrX:54929220	T T	A A	1	a0009 a0009	1	NA18989.hp1 NA18989.hp1	missense_variant	MODERATE	c.2496T>A c.2496T>A	p.Ser832Arg p.Ser832Arg	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2595/4634	2496/4296	832/1431		chrX	54929220
chrX:54929382	C C	CA CA	1	a0015 a0015	1	NA18992.hp2 NA18992.hp2	frameshift_variant	HIGH	c.2659dupA c.2659dupA	p.Thr887fs p.Thr887fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2759/4634	2660/4296	887/1431	INFO_REALIGN_3_PRIME	chrX	54929382
chrX:54929818	G G	A A	1	a0012 a0012	1	HG02970.hp2 HG02970.hp2	missense_variant	MODERATE	c.3094G>A c.3094G>A	p.Ala1032Thr p.Ala1032Thr	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3193/4634	3094/4296	1032/1431		chrX	54929818
chrX:54930004	A A	G G	1	a0011 a0011	1	NA18999.hp1 NA18999.hp1	missense_variant	MODERATE	c.3280A>G c.3280A>G	p.Ile1094Val p.Ile1094Val	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3379/4634	3280/4296	1094/1431		chrX	54930004
chrX:54930281	GT GT	G G	1	a0009 a0009	1	NA18989.hp1 NA18989.hp1	frameshift_variant	HIGH	c.3562delT c.3562delT	p.Cys1188fs p.Cys1188fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3661/4634	3562/4296	1188/1431	INFO_REALIGN_3_PRIME	chrX	54930281
chrX:54930294	AC AC	A A	1	a0009 a0009	1	NA18989.hp1 NA18989.hp1	frameshift_variant	HIGH	c.3573delC c.3573delC	p.Ser1192fs p.Ser1192fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3672/4634	3573/4296	1191/1431	INFO_REALIGN_3_PRIME	chrX	54930294
chrX:54930453	A A	AG AG	1	a0010 a0010	1	NA18978.hp2 NA18978.hp2	frameshift_variant	HIGH	c.3731dupG c.3731dupG	p.Thr1245fs p.Thr1245fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3831/4634	3732/4296	1244/1431	INFO_REALIGN_3_PRIME	chrX	54930453
chrX:54930497	G G	GT GT	1	a0010 a0010	1	NA18978.hp2 NA18978.hp2	frameshift_variant	HIGH	c.3777dupT c.3777dupT	p.Gly1260fs p.Gly1260fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3877/4634	3778/4296	1260/1431	INFO_REALIGN_3_PRIME	chrX	54930497
chrX:54930781	A A	AC AC	1	a0010 a0010	1	NA18978.hp2 NA18978.hp2	frameshift_variant	HIGH	c.4059dupC c.4059dupC	p.Ser1354fs p.Ser1354fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	4159/4634	4060/4296	1354/1431	INFO_REALIGN_3_PRIME	chrX	54930781
chrX:54930969	C C	CT CT	1	a0010 a0010	1	NA18978.hp2 NA18978.hp2	frameshift_variant	HIGH	c.4248dupT c.4248dupT	p.Gly1417fs p.Gly1417fs	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	4348/4634	4249/4296	1417/1431	INFO_REALIGN_3_PRIME	chrX	54930969

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:54922607	G G	A A	1	a0001c0006 a0001c0006	1	HG01192.hp1 HG01192.hp1	synonymous_variant	LOW	c.75G>A c.75G>A	p.Gly25Gly p.Gly25Gly	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	174/4634	75/4296	25/1431	chrX	54922607
chrX:54922757	T T	C C	1	a0001c0007 a0001c0007	1	HG03704.hp2 HG03704.hp2	synonymous_variant	LOW	c.225T>C c.225T>C	p.Pro75Pro p.Pro75Pro	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/13	324/4634	225/4296	75/1431	chrX	54922757
chrX:54927733	C C	G G	1	a0001c0019 a0001c0019	1	HG02451.hp2 HG02451.hp2	synonymous_variant	LOW	c.1830C>G c.1830C>G	p.Arg610Arg p.Arg610Arg	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/13	1929/4634	1830/4296	610/1431	chrX	54927733
chrX:54928959	C C	G G	1	a0014c0022 a0014c0022	1	NA18906.hp2 NA18906.hp2	synonymous_variant	LOW	c.2235C>G c.2235C>G	p.Pro745Pro p.Pro745Pro	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2334/4634	2235/4296	745/1431	chrX	54928959
chrX:54929223	C C	T T	1	a0002c0002 a0002c0002	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	synonymous_variant	LOW	c.2499C>T c.2499C>T	p.Gly833Gly p.Gly833Gly	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2598/4634	2499/4296	833/1431	chrX	54929223
chrX:54929322	C C	T T	1	a0001c0018 a0001c0018	1	HG02071.hp1 HG02071.hp1	synonymous_variant	LOW	c.2598C>T c.2598C>T	p.Ser866Ser p.Ser866Ser	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	2697/4634	2598/4296	866/1431	chrX	54929322
chrX:54930240	T T	C C	1	a0001c0004 a0001c0004	4	NA18939.hp2 NA18983.hp1 NA19000.hp1 others(1): Show NA18939.hp2 NA18983.hp1 NA19000.hp1 NA19078.hp2	synonymous_variant	LOW	c.3516T>C c.3516T>C	p.Pro1172Pro p.Pro1172Pro	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	3615/4634	3516/4296	1172/1431	chrX	54930240
chrX:54930978	T T	C C	1	a0001c0015 a0001c0015	1	NA18948.hp1 NA18948.hp1	synonymous_variant	LOW	c.4254T>C c.4254T>C	p.Ser1418Ser p.Ser1418Ser	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	4353/4634	4254/4296	1418/1431	chrX	54930978
chrX:54931011	G G	A A	1	a0001c0016 a0001c0016	1	HG02055.hp1 HG02055.hp1	synonymous_variant	LOW	c.4287G>A c.4287G>A	p.Ser1429Ser p.Ser1429Ser	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/13	4386/4634	4287/4296	1429/1431	chrX	54931011

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:54920827	C C	T T	1	a0001c0001t0002 a0001c0001t0002	6	HG02818.hp2 HG02886.hp1 HG03098.hp1 others(3): Show HG02818.hp2 HG02886.hp1 HG03098.hp1 HG03209.hp1 HG03579.hp1 NA20129.hp2	5_prime_UTR_variant	MODIFIER	c.-96C>T c.-96C>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/13	1420		chrX	54920827
chrX:54922230	C C	CT CT	1	a0004c0005t0005 a0004c0005t0005	1	NA19059.hp1 NA19059.hp1	5_prime_UTR_variant	MODIFIER	c.-16dupT c.-16dupT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/13	15	INFO_REALIGN_3_PRIME	chrX	54922230
chrX:54922234	G G	GAC GAC	1	a0004c0005t0005 a0004c0005t0005	1	NA19059.hp1 NA19059.hp1	5_prime_UTR_variant	MODIFIER	c.-13_-12insAC c.-13_-12insAC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/13	12		chrX	54922234
chrX:54931210	TC TC	T T	1	a0009c0012t0004 a0009c0012t0004	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.22delC c.22delC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	13/13	194	INFO_REALIGN_3_PRIME	chrX	54931210
chrX:54931269	A A	T T	1	a0001c0001t0003 a0001c0001t0003	3	HG02723.hp1 HG02895.hp1 HG02897.hp1 HG02723.hp1 HG02895.hp1 HG02897.hp1	3_prime_UTR_variant	MODIFIER	c.77A>T c.77A>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	13/13	249		chrX	54931269

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:54921056	G G	A A	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-45+178G>A c.-45+178G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921056
chrX:54921061	C C	T T	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	HG02155.hp2 HG02155.hp2	intron_variant	MODIFIER	c.-45+183C>T c.-45+183C>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921061
chrX:54921174	G G	GA GA	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-45+297dupA c.-45+297dupA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921174
chrX:54921186	A A	AG AG	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-45+312dupG c.-45+312dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921186
chrX:54921255	G G	A A	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-45+377G>A c.-45+377G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921255
chrX:54921323	C C	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	1	NA18973.hp1 NA18973.hp1	intron_variant	MODIFIER	c.-45+445C>A c.-45+445C>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921323
chrX:54921422	G G	GT GT	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-45+547dupT c.-45+547dupT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921422
chrX:54921464	T T	TG TG	2	a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0016 a0001c0001t0001g0017	2	HG02080.hp1 HG03491.hp1 HG02080.hp1 HG03491.hp1	intron_variant	MODIFIER	c.-45+591dupG c.-45+591dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921464
chrX:54921472	A A	AT AT	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-45+594_-45+595ins others(1): Show c.-45+594_-45+595insT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921472
chrX:54921524	A A	AG AG	1	a0013c0011t0001g0038 a0013c0011t0001g0038	1	HG01168.hp1 HG01168.hp1	intron_variant	MODIFIER	c.-45+652dupG c.-45+652dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921524
chrX:54921584	A A	AG AG	2	a0004c0005t0005g0013 a0013c0011t0001g0038 a0004c0005t0005g0013 a0013c0011t0001g0038	2	HG01168.hp1 NA19059.hp1 HG01168.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-614dupG c.-44-614dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921584
chrX:54921606	A A	T T	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	HG03453.hp1 HG03453.hp1	intron_variant	MODIFIER	c.-44-597A>T c.-44-597A>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921606
chrX:54921613	A A	AT AT	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-590_-44-589ins others(1): Show c.-44-590_-44-589insT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921613
chrX:54921654	A A	AG AG	2	a0004c0005t0005g0013 a0015c0008t0001g0036 a0004c0005t0005g0013 a0015c0008t0001g0036	2	NA18992.hp2 NA19059.hp1 NA18992.hp2 NA19059.hp1	intron_variant	MODIFIER	c.-44-545dupG c.-44-545dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921654
chrX:54921704	AG AG	A A	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-495delG c.-44-495delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921704
chrX:54921719	T T	A A	27	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0007 others(24): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0004t0001g0002 a0001c0006t0001g0002 a0001c0018t0001g0002 a0001c0019t0001g0002 a0004c0005t0005g0013 a0005c0009t0001g0019 a0008c0020t0001g0004 a0009c0012t0004g0022 a0010c0014t0001g0002 a0011c0017t0001g0002 a0012c0013t0001g0020 a0016c0023t0001g0002	133	HG00099.hp1 HG00280.hp1 HG00323.hp2 others(130): Show HG00099.hp1 HG00280.hp1 HG00323.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp2 HG01192.hp1 HG01257.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02683.hp2 HG02735.hp1 HG02809.hp1 HG02886.hp2 HG02896.hp2 HG02965.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03453.hp2 HG03490.hp1 HG03491.hp2 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp2 NA18906.hp1 NA18939.hp2 NA18949.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18963.hp1 NA18964.hp1 NA18968.hp1 NA18969.hp1 NA18972.hp2 NA18973.hp1 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18992.hp1 NA18994.hp1 NA18999.hp1 NA19000.hp1 NA19002.hp1 NA19003.hp2 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19057.hp1 NA19059.hp1 NA19059.hp2 NA19074.hp2 NA19078.hp1 NA19078.hp2 NA19080.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-44-484T>A c.-44-484T>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921719
chrX:54921739	AG AG	A A	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-459delG c.-44-459delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921739
chrX:54921749	T T	G G	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-454T>G c.-44-454T>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921749
chrX:54921750	G G	T T	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-453G>T c.-44-453G>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921750
chrX:54921751	T T	G G	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-452T>G c.-44-452T>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921751
chrX:54921752	TG TG	T T	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG01516.hp1 HG01516.hp1	intron_variant	MODIFIER	c.-44-446delG c.-44-446delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921752
chrX:54921771	A A	T T	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.-44-432A>T c.-44-432A>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921771
chrX:54921893	G G	GC GC	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-309dupC c.-44-309dupC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921893
chrX:54921940	A A	G G	13	a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0031 others(10): Show a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0007t0001g0001 a0001c0015t0001g0001 a0003c0003t0001g0001 a0006c0010t0001g0035 a0007c0021t0001g0001 a0013c0011t0001g0038 a0015c0008t0001g0036	113	HG00099.hp2 HG00140.hp1 HG00323.hp1 others(110): Show HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00558.hp2 HG00621.hp1 HG00639.hp1 HG00735.hp2 HG01070.hp1 HG01074.hp1 HG01081.hp2 HG01109.hp1 HG01168.hp1 HG01169.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01516.hp2 HG01934.hp1 HG01975.hp1 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp2 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02293.hp2 HG02683.hp1 HG02698.hp1 HG03239.hp1 HG03239.hp2 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp2 HG03942.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18950.hp2 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18979.hp1 NA18980.hp2 NA18990.hp1 NA18992.hp2 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18999.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19082.hp1 NA19083.hp1 NA19090.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-44-263A>G c.-44-263A>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54921940
chrX:54921944	T T	TG TG	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-253dupG c.-44-253dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921944
chrX:54921996	A A	AG AG	1	a0001c0001t0001g0030 a0001c0001t0001g0030	1	HG02615.hp2 HG02615.hp2	intron_variant	MODIFIER	c.-44-202dupG c.-44-202dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54921996
chrX:54922049	G G	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	10	HG01243.hp1 HG02109.hp2 HG02258.hp1 others(7): Show HG01243.hp1 HG02109.hp2 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02717.hp1 HG02818.hp1 HG02922.hp2 HG06807.hp1	intron_variant	MODIFIER	c.-44-154G>T c.-44-154G>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12		chrX	54922049
chrX:54922062	G G	GA GA	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-138dupA c.-44-138dupA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54922062
chrX:54922175	TC TC	T T	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.-44-23delC c.-44-23delC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	1/12	INFO_REALIGN_3_PRIME	chrX	54922175
chrX:54922322	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	intron_variant	MODIFIER	c.45+31T>C c.45+31T>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/12		chrX	54922322
chrX:54922325	G G	GC GC	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.45+38dupC c.45+38dupC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	54922325
chrX:54922428	AG AG	A A	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.45+139delG c.45+139delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	54922428
chrX:54922453	AT AT	A A	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.46-123delT c.46-123delT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	2/12	INFO_REALIGN_3_PRIME	chrX	54922453
chrX:54923820	AC AC	A A	1	a0001c0001t0001g0027 a0001c0001t0001g0027	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.1236+55delC c.1236+55delC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12	INFO_REALIGN_3_PRIME	chrX	54923820
chrX:54923845	TA TA	T T	1	a0006c0010t0001g0035 a0006c0010t0001g0035	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.1236+78delA c.1236+78delA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12		chrX	54923845
chrX:54923963	T T	TC TC	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1236+197dupC c.1236+197dupC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12	INFO_REALIGN_3_PRIME	chrX	54923963
chrX:54924023	G G	A A	1	a0001c0001t0002g0028 a0001c0001t0002g0028	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.1236+255G>A c.1236+255G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12		chrX	54924023
chrX:54924213	A A	AG AG	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1237-236dupG c.1237-236dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12	INFO_REALIGN_3_PRIME	chrX	54924213
chrX:54924221	A A	C C	1	a0001c0001t0001g0029 a0001c0001t0001g0029	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.1237-230A>C c.1237-230A>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12		chrX	54924221
chrX:54924314	G G	A A	12	a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0031 others(9): Show a0001c0001t0001g0001 a0001c0001t0001g0017 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0007t0001g0001 a0001c0015t0001g0001 a0003c0003t0001g0001 a0006c0010t0001g0035 a0007c0021t0001g0001 a0013c0011t0001g0038 a0015c0008t0001g0036	112	HG00099.hp2 HG00140.hp1 HG00323.hp1 others(109): Show HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00558.hp2 HG00621.hp1 HG00639.hp1 HG00735.hp2 HG01070.hp1 HG01074.hp1 HG01081.hp2 HG01109.hp1 HG01168.hp1 HG01169.hp1 HG01256.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp2 HG01516.hp2 HG01934.hp1 HG01975.hp1 HG01981.hp2 HG01993.hp2 HG02015.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp2 HG02129.hp1 HG02148.hp1 HG02155.hp1 HG02165.hp2 HG02293.hp2 HG02683.hp1 HG02698.hp1 HG03239.hp1 HG03239.hp2 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp2 HG03942.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp1 NA18941.hp1 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18950.hp2 NA18952.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18979.hp1 NA18980.hp2 NA18990.hp1 NA18992.hp2 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18999.hp2 NA19001.hp1 NA19001.hp2 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19074.hp1 NA19076.hp1 NA19079.hp1 NA19080.hp1 NA19082.hp1 NA19083.hp1 NA19090.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.1237-137G>A c.1237-137G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	3/12		chrX	54924314
chrX:54924844	G G	GC GC	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1405+114dupC c.1405+114dupC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	5/12	INFO_REALIGN_3_PRIME	chrX	54924844
chrX:54925100	TG TG	T T	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1485+36delG c.1485+36delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	6/12	INFO_REALIGN_3_PRIME	chrX	54925100
chrX:54925146	A A	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	intron_variant	MODIFIER	c.1485+78A>G c.1485+78A>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	6/12		chrX	54925146
chrX:54925167	T T	TCCAGCCC others(32): Show TCCAGCCCCATTACTGTGTGAATGGGCAGACAGTGGCCTA	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA18990.hp1 NA18990.hp1	intron_variant	MODIFIER	c.1485+100_1485+138d others(41): Show c.1485+100_1485+138dupCCAGCCCCATTACTGTGTGAATGGGCAG ACAGTGGCCTA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	6/12	INFO_REALIGN_3_PRIME	chrX	54925167
chrX:54925494	G G	A A	2	a0001c0001t0001g0005 a0002c0002t0001g0006 a0001c0001t0001g0005 a0002c0002t0001g0006	18	HG01243.hp1 HG01255.hp1 HG02109.hp2 others(15): Show HG01243.hp1 HG01255.hp1 HG02109.hp2 HG02258.hp1 HG02280.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02717.hp1 HG02818.hp1 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.1486-98G>A c.1486-98G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	6/12		chrX	54925494
chrX:54925690	TG TG	T T	1	a0005c0009t0001g0019 a0005c0009t0001g0019	1	NA19003.hp2 NA19003.hp2	intron_variant	MODIFIER	c.1577+10delG c.1577+10delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	54925690
chrX:54925740	AC AC	A A	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1577+61delC c.1577+61delC	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/12	INFO_REALIGN_3_PRIME	chrX	54925740
chrX:54925846	A A	G G	1	a0001c0001t0001g0026 a0001c0001t0001g0026	1	HG02273.hp1 HG02273.hp1	intron_variant	MODIFIER	c.1577+163A>G c.1577+163A>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/12		chrX	54925846
chrX:54925994	A A	G G	28	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0009 others(25): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0034 a0001c0004t0001g0002 a0001c0006t0001g0002 a0001c0018t0001g0002 a0001c0019t0001g0002 a0002c0002t0001g0006 a0004c0005t0005g0013 a0005c0009t0001g0019 a0008c0020t0001g0004 a0009c0012t0004g0022 a0010c0014t0001g0002 a0011c0017t0001g0002 a0016c0023t0001g0002	136	HG00099.hp1 HG00280.hp1 HG00323.hp2 others(133): Show HG00099.hp1 HG00280.hp1 HG00323.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp2 HG01192.hp1 HG01255.hp1 HG01257.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp2 HG02683.hp2 HG02735.hp1 HG02886.hp2 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp2 NA18939.hp2 NA18941.hp2 NA18949.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18963.hp1 NA18964.hp1 NA18968.hp1 NA18969.hp1 NA18972.hp2 NA18973.hp1 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18992.hp1 NA18994.hp1 NA18999.hp1 NA19000.hp1 NA19002.hp1 NA19003.hp2 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19057.hp1 NA19059.hp1 NA19059.hp2 NA19074.hp2 NA19078.hp1 NA19078.hp2 NA19080.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1577+311A>G c.1577+311A>G	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/12		chrX	54925994
chrX:54926313	C C	T T	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.1578-97C>T c.1578-97C>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	7/12		chrX	54926313
chrX:54926556	CCT CCT	C C	5	a0001c0001t0001g0004 a0001c0001t0001g0015 a0001c0001t0001g0018 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0024 a0008c0020t0001g0004	15	HG00099.hp1 HG00323.hp2 HG00642.hp1 others(12): Show HG00099.hp1 HG00323.hp2 HG00642.hp1 HG00673.hp1 HG01168.hp2 HG01257.hp2 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG02523.hp1 HG03491.hp2 HG03927.hp1 HG03927.hp2 NA18972.hp2 NA18973.hp1	intron_variant	MODIFIER	c.1658-26_1658-25del others(2): Show c.1658-26_1658-25delCT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	8/12		chrX	54926556
chrX:54926657	C C	T T	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	HG02523.hp1 HG02523.hp1	intron_variant	MODIFIER	c.1700+32C>T c.1700+32C>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	9/12		chrX	54926657
chrX:54926712	TG TG	T T	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1700+89delG c.1700+89delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	54926712
chrX:54926869	CAA CAA	C C	1	a0001c0001t0001g0023 a0001c0001t0001g0023	1	NA18975.hp1 NA18975.hp1	intron_variant	MODIFIER	c.1701-172_1701-171d others(4): Show c.1701-172_1701-171delAA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	9/12	INFO_REALIGN_3_PRIME	chrX	54926869
chrX:54927214	G G	A A	27	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0009 others(24): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0004t0001g0002 a0001c0006t0001g0002 a0001c0018t0001g0002 a0001c0019t0001g0002 a0004c0005t0005g0013 a0005c0009t0001g0019 a0008c0020t0001g0004 a0009c0012t0004g0022 a0010c0014t0001g0002 a0011c0017t0001g0002 a0012c0013t0001g0020 a0016c0023t0001g0002	128	HG00099.hp1 HG00280.hp1 HG00323.hp2 others(125): Show HG00099.hp1 HG00280.hp1 HG00323.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp2 HG01192.hp1 HG01257.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp2 HG02683.hp2 HG02735.hp1 HG02886.hp2 HG02896.hp2 HG02965.hp1 HG02970.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03490.hp1 HG03491.hp2 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp2 NA18939.hp2 NA18949.hp1 NA18950.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18963.hp1 NA18964.hp1 NA18968.hp1 NA18969.hp1 NA18972.hp2 NA18973.hp1 NA18975.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18992.hp1 NA18994.hp1 NA18999.hp1 NA19000.hp1 NA19002.hp1 NA19003.hp2 NA19010.hp2 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19057.hp1 NA19059.hp1 NA19059.hp2 NA19074.hp2 NA19078.hp1 NA19078.hp2 NA19080.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1763+109G>A c.1763+109G>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12		chrX	54927214
chrX:54927223	G G	C C	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	HG03239.hp2 HG03239.hp2	intron_variant	MODIFIER	c.1763+118G>C c.1763+118G>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12		chrX	54927223
chrX:54927254	T T	C C	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.1763+149T>C c.1763+149T>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12		chrX	54927254
chrX:54927297	CT CT	C C	1	a0004c0005t0005g0013 a0004c0005t0005g0013	1	NA19059.hp1 NA19059.hp1	intron_variant	MODIFIER	c.1763+194delT c.1763+194delT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12	INFO_REALIGN_3_PRIME	chrX	54927297
chrX:54927495	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	intron_variant	MODIFIER	c.1764-172T>C c.1764-172T>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12		chrX	54927495
chrX:54927551	A A	T T	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG01070.hp2 HG01071.hp1 HG01070.hp2 HG01071.hp1	intron_variant	MODIFIER	c.1764-116A>T c.1764-116A>T	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	10/12		chrX	54927551
chrX:54927783	TA TA	T T	1	a0009c0012t0004g0022 a0009c0012t0004g0022	1	NA18989.hp1 NA18989.hp1	splice_region_variant&intron_variant	LOW	c.1878+4delA c.1878+4delA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	54927783
chrX:54927815	A A	AG AG	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1878+36dupG c.1878+36dupG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	54927815
chrX:54927908	C C	CT CT	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1878+130dupT c.1878+130dupT	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	54927908
chrX:54927984	T T	A A	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.1878+203T>A c.1878+203T>A	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12		chrX	54927984
chrX:54928081	G G	C C	30	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 others(27): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0003g0008 a0001c0004t0001g0002 a0001c0006t0001g0002 a0001c0018t0001g0002 a0001c0019t0001g0002 a0002c0002t0001g0006 a0005c0009t0001g0019 a0008c0020t0001g0004 a0009c0012t0004g0022 a0010c0014t0001g0002 a0011c0017t0001g0002 a0012c0013t0001g0020 a0016c0023t0001g0002	154	HG00099.hp1 HG00280.hp1 HG00323.hp2 others(151): Show HG00099.hp1 HG00280.hp1 HG00323.hp2 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01106.hp1 HG01168.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01257.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp2 HG01981.hp1 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp2 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03654.hp1 HG03688.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18939.hp2 NA18941.hp2 NA18949.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18963.hp1 NA18968.hp1 NA18969.hp1 NA18972.hp2 NA18973.hp1 NA18978.hp2 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18992.hp1 NA18994.hp1 NA18999.hp1 NA19000.hp1 NA19002.hp1 NA19003.hp2 NA19010.hp2 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19057.hp1 NA19059.hp2 NA19063.hp1 NA19074.hp2 NA19078.hp1 NA19078.hp2 NA19080.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.1878+300G>C c.1878+300G>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12		chrX	54928081
chrX:54928378	T T	C C	1	a0002c0002t0001g0006 a0002c0002t0001g0006	8	HG01255.hp1 HG02559.hp2 HG02922.hp1 others(5): Show HG01255.hp1 HG02559.hp2 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp1 NA20129.hp1	intron_variant	MODIFIER	c.1879-225T>C c.1879-225T>C	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12		chrX	54928378
chrX:54928508	TA TA	T T	1	a0009c0012t0004g0022 a0009c0012t0004g0022	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.1879-89delA c.1879-89delA	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	11/12	INFO_REALIGN_3_PRIME	chrX	54928508
chrX:54931055	AG AG	A A	1	a0015c0008t0001g0036 a0015c0008t0001g0036	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.11+26delG c.11+26delG	TRO	ENSG00000067445.22	transcript	ENST00000173898.12	protein_coding	12/12	INFO_REALIGN_3_PRIME	chrX	54931055

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🧬 JoGo Online Haplotype Explorer TRO_chrX_54915824_54936431

JoGo Local Haplotype Explorer (on iGV) TRO_chrX_54915824_54936431

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 16)

CCoding Level Haplotype Info (Total: 23)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 39)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 23)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 25)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 55)

Haplotype Details by Sample (Haploid Level) (Total: 310)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 34)

CCoding Level Variants (Synonymous Mutations) (Total: 9)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 5)

GGenebody Level Haplotype Variants (Intron) (Total: 68)

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Annotation (Repeats)

Annotation (SNP Array)