Joint Open Genome and Omics Platform (JoGo)

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geneid	728712
ensemblid	ENSG00000203926.5
hgncid	14328
symbol	SPANXA2
name	SPANX family member A2
refseq_nuc	NM_145662.4
refseq_prot	NP_663695.1
ensembl_nuc	ENST00000370518.4
ensembl_prot	ENSP00000359549.3
mane_status	MANE Select
chr	chrX
start	141589708
end	141590762
strand	+
ver	v1.2
region	chrX:141589708-141590762
region5000	chrX:141584708-141595762
regionname0	SPANXA2_chrX_141589708_141590762
regionname5000	SPANXA2_chrX_141584708_141595762

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0000	0/0	0	2	0	0	2	0	0	2	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001	0/0	97	115	15	15	75	2	8	63	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0002	0/0	97	30	7	2	18	0	3	18	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0003	0/0	97	21	9	4	7	0	1	5	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0004	0/0	97	3	3	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0005	0/0	103	2	2	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0006	0/0	15	1	0	0	1	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0007	0/0	39	1	0	0	1	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0008	0/0	97	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0009	0/0	97	1	0	0	0	0	1	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0010	0/0	72	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0011	0/0	92	1	0	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0012	0/0	97	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0013	0/0	97	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0014	0/0	16	1	0	0	1	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0015	0/0	97	1	0	0	1	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0016	0/0	103	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0017	0/0	103	1	1	0	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0000	0/0	0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0001	0/0	294	115	15	15	75	2	8	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0002	0/0	294	30	7	2	18	0	3	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0003	0/0	294	21	9	4	7	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0004	0/0	294	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0005	0/0	312	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0006	0/0	291	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0007	0/0	295	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0008	0/0	294	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0009	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0010	0/0	294	1	0	0	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0011	0/0	295	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0012	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0013	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0014	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0015	0/0	294	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0016	0/0	312	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
c0017	0/0	312	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0000	0/0	0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0001	0/0	115	151	25	17	95	2	12	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0002	0/0	115	22	8	5	8	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0003	0/0	115	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0004	0/0	115	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0005	0/0	115	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0006	0/0	114	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0007	0/0	115	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
t0008	0/0	115	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0001	0/0	132	14	15	90	2	11	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0002	0/0	22	10	4	7	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0003	0/0	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0004	0/0	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0005	0/0	2	0	1	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0006	0/0	2	1	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0007	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0008	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0009	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0010	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0011	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0012	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0013	0/0	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0014	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0015	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0016	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0017	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0018	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0019	0/0	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0020	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0021	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
g0022	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0000c0000	0/0	0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001c0001	0/0	294	115	15	15	75	2	8	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0002c0002	0/0	294	30	7	2	18	0	3	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0003c0003	0/0	294	21	9	4	7	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0004c0004	0/0	294	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0005c0005	0/0	312	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0006c0006	0/0	291	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0007c0008	0/0	294	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0008c0009	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0009c0010	0/0	294	1	0	0	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0010c0012	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0011c0011	0/0	295	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0012c0013	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0013c0014	0/0	294	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0014c0007	0/0	295	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0015c0015	0/0	294	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0016c0017	0/0	312	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0017c0016	0/0	312	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0000c0000t0000	0/0	0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001c0001t0001	0/0	408	110	11	15	74	2	8	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001c0001t0002	0/0	408	2	1	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001c0001t0003	0/0	408	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0001c0001t0007	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0002c0002t0001	0/0	408	30	7	2	18	0	3	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0003c0003t0001	0/0	408	4	3	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0003c0003t0002	0/0	408	17	6	4	6	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0004c0004t0001	0/0	408	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0004c0004t0002	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0005c0005t0004	0/0	426	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0005c0005t0008	0/0	426	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0006c0006t0006	0/0	404	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0007c0008t0001	0/0	408	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0008c0009t0001	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0009c0010t0001	0/0	408	1	0	0	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0010c0012t0001	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0011c0011t0002	0/0	409	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0012c0013t0005	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0013c0014t0003	0/0	408	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0014c0007t0002	0/0	409	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0015c0015t0001	0/0	408	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0016c0017t0004	0/0	426	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762
a0017c0016t0004	0/0	426	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	copy fasta	chrX	141584708	141595762

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0000c0000t0000g0000	0/0	2	0	0	2	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0001	0/0	103	9	13	71	2	8	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0005	0/0	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0006	0/0	2	1	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0013	0/0	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0015	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0020	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0002g0001	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0002g0004	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0003g0004	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0001c0001t0007g0014	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0002c0002t0001g0001	0/0	27	4	2	18	0	3	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0002c0002t0001g0003	0/0	3	3	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0003c0003t0001g0002	0/0	2	1	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0003c0003t0001g0007	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0003c0003t0002g0002	0/0	16	5	4	6	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0003c0003t0002g0011	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0004c0004t0001g0002	0/0	2	2	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0004c0004t0002g0002	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0005c0005t0004g0009	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0005c0005t0008g0009	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0006c0006t0006g0016	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0007c0008t0001g0012	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0008c0009t0001g0001	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0009c0010t0001g0005	0/0	1	0	0	0	0	1	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0010c0012t0001g0002	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0011c0011t0002g0019	0/0	1	0	1	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0012c0013t0005g0017	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0013c0014t0003g0022	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0014c0007t0002g0018	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0015c0015t0001g0010	0/0	1	0	0	1	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0016c0017t0004g0008	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
a0017c0016t0004g0008	0/0	1	1	0	0	0	0	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00408	hp2	a0003	c0003	t0002	g0002	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00733	hp1	a0003	c0003	t0002	g0002	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG00733	hp2	a0002	c0002	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01109	hp1	a0003	c0003	t0002	g0002	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01168	hp1	a0002	c0002	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01175	hp2	a0001	c0001	t0001	g0005	AMR	PUR	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01346	hp2	a0001	c0001	t0001	g0013	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01358	hp1	a0003	c0003	t0002	g0002	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01891	hp1	a0003	c0003	t0002	g0002	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01891	hp2	a0001	c0001	t0003	g0004	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01943	hp1	a0011	c0011	t0002	g0019	AMR	PEL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG01981	hp2	a0003	c0003	t0002	g0002	AMR	PEL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02083	hp1	a0001	c0001	t0002	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02132	hp1	a0003	c0003	t0002	g0002	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02145	hp1	a0001	c0001	t0001	g0015	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02258	hp1	a0003	c0003	t0001	g0007	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02280	hp1	a0012	c0013	t0005	g0017	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02280	hp2	a0003	c0003	t0002	g0002	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02451	hp1	a0013	c0014	t0003	g0022	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02451	hp2	a0002	c0002	t0001	g0003	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02615	hp2	a0017	c0016	t0004	g0008	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02630	hp1	a0001	c0001	t0003	g0004	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02630	hp2	a0002	c0002	t0001	g0003	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02647	hp1	a0003	c0003	t0002	g0002	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02698	hp1	a0009	c0010	t0001	g0005	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02738	hp1	a0003	c0003	t0002	g0002	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02818	hp1	a0016	c0017	t0004	g0008	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02818	hp2	a0008	c0009	t0001	g0001	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02886	hp2	a0010	c0012	t0001	g0002	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02895	hp1	a0005	c0005	t0004	g0009	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02896	hp1	a0001	c0001	t0001	g0001	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02896	hp2	a0001	c0001	t0007	g0014	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03041	hp1	a0003	c0003	t0002	g0002	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03041	hp2	a0002	c0002	t0001	g0001	AFR	GWD	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03098	hp1	a0003	c0003	t0002	g0002	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03209	hp1	a0005	c0005	t0008	g0009	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03453	hp1	a0004	c0004	t0001	g0002	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03453	hp2	a0003	c0003	t0001	g0007	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03486	hp2	a0001	c0001	t0002	g0004	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03491	hp1	a0002	c0002	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03491	hp2	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG04184	hp1	a0001	c0001	t0001	g0001	SAS	BEB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG04184	hp2	a0002	c0002	t0001	g0001	SAS	BEB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG04228	hp1	a0002	c0002	t0001	g0001	SAS	STU	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18944	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18946	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18951	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18957	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18957	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18960	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18965	hp1	a0006	c0006	t0006	g0016	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18966	hp1	a0003	c0003	t0002	g0002	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18968	hp1	a0000	c0000	t0000	g0000	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18969	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18969	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18973	hp1	a0001	c0001	t0001	g0020	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18973	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18975	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18982	hp1	a0014	c0007	t0002	g0018	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18986	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18991	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18993	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18993	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18994	hp1	a0003	c0003	t0002	g0002	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18998	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18998	hp2	a0000	c0000	t0000	g0000	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19000	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19010	hp2	a0001	c0001	t0001	g0006	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19011	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19012	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19030	hp1	a0002	c0002	t0001	g0001	AFR	LWK	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19030	hp2	a0003	c0003	t0001	g0002	AFR	LWK	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19043	hp1	a0002	c0002	t0001	g0001	AFR	LWK	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19057	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19063	hp1	a0015	c0015	t0001	g0010	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19064	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19065	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19066	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19067	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19070	hp1	a0001	c0001	t0001	g0021	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19075	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19077	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19077	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19079	hp2	a0003	c0003	t0002	g0002	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19080	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19080	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19081	hp1	a0003	c0003	t0002	g0002	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19081	hp2	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19083	hp1	a0003	c0003	t0001	g0002	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19087	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19088	hp1	a0002	c0002	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19240	hp1	a0004	c0004	t0002	g0002	AFR	YRI	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA19240	hp2	a0004	c0004	t0001	g0002	AFR	YRI	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02109	hp1	a0003	c0003	t0002	g0011	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02109	hp2	a0002	c0002	t0001	g0001	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG02486	hp1	a0001	c0001	t0001	g0006	AFR	ACB	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA18955	hp1	a0007	c0008	t0001	g0012	EAS	JPT	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762
NA21309	hp2	a0002	c0002	t0001	g0003	AFR	LWK	SPANXA2_chrX_141584708_141595762	SPANXA2	chrX	141584708	141595762

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:141589772	A A	G G	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.5A>G c.5A>G	p.Asp2Gly p.Asp2Gly	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	65/408	5/294	2/97		chrX	141589772
chrX:141589774	A A	C C	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.7A>C c.7A>C	p.Lys3Gln p.Lys3Gln	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	67/408	7/294	3/97		chrX	141589774
chrX:141589787	C C	T T	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.20C>T c.20C>T	p.Ala7Val p.Ala7Val	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	80/408	20/294	7/97		chrX	141589787
chrX:141589789	G G	C C	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.22G>C c.22G>C	p.Gly8Arg p.Gly8Arg	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	82/408	22/294	8/97		chrX	141589789
chrX:141589789	GGC GGC	G G	1	a0006 a0006	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.24_25delCG c.24_25delCG	p.Val10fs p.Val10fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	84/408	24/294	8/97	INFO_REALIGN_3_PRIME	chrX	141589789
chrX:141589792	G G	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.25G>A c.25G>A	p.Gly9Arg p.Gly9Arg	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	85/408	25/294	9/97		chrX	141589792
chrX:141589792	G G	C C	1	a0006 a0006	1	NA18965.hp1 NA18965.hp1	missense_variant	MODERATE	c.25G>C c.25G>C	p.Gly9Arg p.Gly9Arg	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	85/408	25/294	9/97		chrX	141589792
chrX:141589795	G G	C C	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.28G>C c.28G>C	p.Val10Leu p.Val10Leu	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	88/408	28/294	10/97		chrX	141589795
chrX:141589808	T T	TC TC	1	a0014 a0014	1	NA18982.hp1 NA18982.hp1	frameshift_variant	HIGH	c.45dupC c.45dupC	p.Cys16fs p.Cys16fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	106/408	46/294	16/97	INFO_REALIGN_3_PRIME	chrX	141589808
chrX:141589808	TC TC	T T	1	a0015 a0015	1	NA19063.hp1 NA19063.hp1	frameshift_variant	HIGH	c.45delC c.45delC	p.Cys16fs p.Cys16fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	105/408	45/294	15/97	INFO_REALIGN_3_PRIME	chrX	141589808
chrX:141589818	T T	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.51T>A c.51T>A	p.Asp17Glu p.Asp17Glu	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	111/408	51/294	17/97		chrX	141589818
chrX:141589821	C C	CA CA	1	a0007 a0007	1	NA18955.hp1 NA18955.hp1	frameshift_variant	HIGH	c.56dupA c.56dupA	p.Asn19fs p.Asn19fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	117/408	57/294	19/97	INFO_REALIGN_3_PRIME	chrX	141589821
chrX:141589829	C C	T T	1	a0013 a0013	1	HG02451.hp1 HG02451.hp1	missense_variant	MODERATE	c.62C>T c.62C>T	p.Ala21Val p.Ala21Val	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	122/408	62/294	21/97		chrX	141589829
chrX:141589834	G G	GAGGCCAA others(11): Show GAGGCCAATGAGGCCAACA	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	conservative_inframe_insertion&splice_region_variant	MODERATE	c.69_70insGCCAATGAGG others(8): Show c.69_70insGCCAATGAGGCCAACAAG	p.Glu23_Met24insAlaA others(14): Show p.Glu23_Met24insAlaAsnGluAlaAsnLys	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	130/408	70/294	24/97	INFO_REALIGN_3_PRIME	chrX	141589834
chrX:141589837	A A	AG AG	1	a0015 a0015	1	NA19063.hp1 NA19063.hp1	frameshift_variant&splice_region_variant	HIGH	c.70_71insG c.70_71insG	p.Met24fs p.Met24fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	131/408	71/294	24/97		chrX	141589837
chrX:141589838	T T	C C	4	a0005 a0013 a0016 others(1): Show a0005 a0013 a0016 a0017	5	HG02451.hp1 HG02615.hp2 HG02818.hp1 others(2): Show HG02451.hp1 HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant&splice_region_variant	MODERATE	c.71T>C c.71T>C	p.Met24Thr p.Met24Thr	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	131/408	71/294	24/97		chrX	141589838
chrX:141590499	C C	T T	6	a0003 a0004 a0010 others(3): Show a0003 a0004 a0010 a0011 a0012 a0014	28	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(25): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.85C>T c.85C>T	p.Pro29Ser p.Pro29Ser	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	145/408	85/294	29/97		chrX	141590499
chrX:141590503	C C	G G	6	a0003 a0004 a0010 others(3): Show a0003 a0004 a0010 a0011 a0012 a0014	28	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(25): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.89C>G c.89C>G	p.Thr30Ser p.Thr30Ser	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	149/408	89/294	30/97		chrX	141590503
chrX:141590508	G G	T T	6	a0003 a0004 a0010 others(3): Show a0003 a0004 a0010 a0011 a0012 a0014	28	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(25): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.94G>T c.94G>T	p.Asp32Tyr p.Asp32Tyr	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	154/408	94/294	32/97		chrX	141590508
chrX:141590538	A A	C C	7	a0003 a0004 a0010 others(4): Show a0003 a0004 a0010 a0011 a0012 a0014 a0016	29	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(26): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02818.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.124A>C c.124A>C	p.Met42Leu p.Met42Leu	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	184/408	124/294	42/97		chrX	141590538
chrX:141590540	G G	A A	7	a0003 a0004 a0010 others(4): Show a0003 a0004 a0010 a0011 a0012 a0014 a0016	29	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(26): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02818.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.126G>A c.126G>A	p.Met42Ile p.Met42Ile	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	186/408	126/294	42/97		chrX	141590540
chrX:141590589	T T	G G	5	a0002 a0005 a0009 others(2): Show a0002 a0005 a0009 a0016 a0017	35	HG00733.hp2 HG01168.hp1 HG02109.hp2 others(32): Show HG00733.hp2 HG01168.hp1 HG02109.hp2 HG02451.hp2 HG02615.hp2 HG02630.hp2 HG02698.hp1 HG02818.hp1 HG02895.hp1 HG03041.hp2 HG03209.hp1 HG03491.hp1 HG04184.hp2 HG04228.hp1 NA18944.hp1 NA18960.hp1 NA18986.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA19000.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19057.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19088.hp1 NA21309.hp2	missense_variant	MODERATE	c.175T>G c.175T>G	p.Phe59Val p.Phe59Val	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	235/408	175/294	59/97		chrX	141590589
chrX:141590591	T T	G G	5	a0002 a0005 a0009 others(2): Show a0002 a0005 a0009 a0016 a0017	35	HG00733.hp2 HG01168.hp1 HG02109.hp2 others(32): Show HG00733.hp2 HG01168.hp1 HG02109.hp2 HG02451.hp2 HG02615.hp2 HG02630.hp2 HG02698.hp1 HG02818.hp1 HG02895.hp1 HG03041.hp2 HG03209.hp1 HG03491.hp1 HG04184.hp2 HG04228.hp1 NA18944.hp1 NA18960.hp1 NA18986.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18998.hp1 NA19000.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19057.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19088.hp1 NA21309.hp2	missense_variant	MODERATE	c.177T>G c.177T>G	p.Phe59Leu p.Phe59Leu	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	237/408	177/294	59/97		chrX	141590591
chrX:141590591	TA TA	T T	1	a0006 a0006	1	NA18965.hp1 NA18965.hp1	frameshift_variant	HIGH	c.181delA c.181delA	p.Arg61fs p.Arg61fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	241/408	181/294	61/97	INFO_REALIGN_3_PRIME	chrX	141590591
chrX:141590616	C C	G G	4	a0004 a0009 a0012 others(1): Show a0004 a0009 a0012 a0017	6	HG02280.hp1 HG02615.hp2 HG02698.hp1 others(3): Show HG02280.hp1 HG02615.hp2 HG02698.hp1 HG03453.hp1 NA19240.hp1 NA19240.hp2	missense_variant	MODERATE	c.202C>G c.202C>G	p.Leu68Val p.Leu68Val	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	262/408	202/294	68/97		chrX	141590616
chrX:141590631	C C	T T	1	a0010 a0010	1	HG02886.hp2 HG02886.hp2	stop_gained	HIGH	c.217C>T c.217C>T	p.Arg73* p.Arg73*	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	277/408	217/294	73/97		chrX	141590631
chrX:141590634	G G	A A	1	a0012 a0012	1	HG02280.hp1 HG02280.hp1	missense_variant	MODERATE	c.220G>A c.220G>A	p.Glu74Lys p.Glu74Lys	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	280/408	220/294	74/97		chrX	141590634
chrX:141590647	A A	AC AC	1	a0011 a0011	1	HG01943.hp1 HG01943.hp1	frameshift_variant	HIGH	c.238dupC c.238dupC	p.Leu80fs p.Leu80fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	299/408	239/294	80/97	INFO_REALIGN_3_PRIME	chrX	141590647
chrX:141590652	C C	G G	4	a0005 a0008 a0016 others(1): Show a0005 a0008 a0016 a0017	5	HG02615.hp2 HG02818.hp1 HG02818.hp2 others(2): Show HG02615.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.238C>G c.238C>G	p.Leu80Val p.Leu80Val	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	298/408	238/294	80/97		chrX	141590652
chrX:141590653	T T	A A	4	a0005 a0008 a0016 others(1): Show a0005 a0008 a0016 a0017	5	HG02615.hp2 HG02818.hp1 HG02818.hp2 others(2): Show HG02615.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.239T>A c.239T>A	p.Leu80His p.Leu80His	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	299/408	239/294	80/97		chrX	141590653
chrX:141590678	G G	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.264G>A c.264G>A	p.Met88Ile p.Met88Ile	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	324/408	264/294	88/97		chrX	141590678
chrX:141590679	GA GA	G G	1	a0007 a0007	1	NA18955.hp1 NA18955.hp1	frameshift_variant	HIGH	c.268delA c.268delA	p.Ile90fs p.Ile90fs	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	328/408	268/294	90/97	INFO_REALIGN_3_PRIME	chrX	141590679
chrX:141590686	T T	C C	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.272T>C c.272T>C	p.Met91Thr p.Met91Thr	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	332/408	272/294	91/97		chrX	141590686
chrX:141590688	G G	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.274G>A c.274G>A	p.Val92Ile p.Val92Ile	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	334/408	274/294	92/97		chrX	141590688
chrX:141590689	T T	C C	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.275T>C c.275T>C	p.Val92Ala p.Val92Ala	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	335/408	275/294	92/97		chrX	141590689
chrX:141590695	T T	G G	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.281T>G c.281T>G	p.Ile94Arg p.Ile94Arg	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	341/408	281/294	94/97		chrX	141590695
chrX:141590700	G G	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.286G>A c.286G>A	p.Ala96Thr p.Ala96Thr	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	346/408	286/294	96/97		chrX	141590700
chrX:141590701	C C	A A	3	a0005 a0016 a0017 a0005 a0016 a0017	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	missense_variant	MODERATE	c.287C>A c.287C>A	p.Ala96Glu p.Ala96Glu	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	347/408	287/294	96/97		chrX	141590701

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:141589830	C C	G G	1	a0013c0014 a0013c0014	1	HG02451.hp1 HG02451.hp1	synonymous_variant	LOW	c.63C>G c.63C>G	p.Ala21Ala p.Ala21Ala	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	123/408	63/294	21/97	chrX	141589830
chrX:141589833	C C	T T	1	a0013c0014 a0013c0014	1	HG02451.hp1 HG02451.hp1	synonymous_variant	LOW	c.66C>T c.66C>T	p.Asn22Asn p.Asn22Asn	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	126/408	66/294	22/97	chrX	141589833
chrX:141590501	A A	G G	6	a0003c0003 a0004c0004 a0010c0012 others(3): Show a0003c0003 a0004c0004 a0010c0012 a0011c0011 a0012c0013 a0014c0007	28	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(25): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	synonymous_variant	LOW	c.87A>G c.87A>G	p.Pro29Pro p.Pro29Pro	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	147/408	87/294	29/97	chrX	141590501
chrX:141590531	T T	G G	6	a0003c0003 a0004c0004 a0010c0012 others(3): Show a0003c0003 a0004c0004 a0010c0012 a0011c0011 a0012c0013 a0014c0007	28	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(25): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02647.hp1 HG02738.hp1 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2	synonymous_variant	LOW	c.117T>G c.117T>G	p.Pro39Pro p.Pro39Pro	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	177/408	117/294	39/97	chrX	141590531
chrX:141590558	G G	C C	1	a0008c0009 a0008c0009	1	HG02818.hp2 HG02818.hp2	synonymous_variant	LOW	c.144G>C c.144G>C	p.Ser48Ser p.Ser48Ser	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	204/408	144/294	48/97	chrX	141590558

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:141589712	A A	C C	7	a0001c0001t0003 a0001c0001t0007 a0005c0005t0004 others(4): Show a0001c0001t0003 a0001c0001t0007 a0005c0005t0004 a0005c0005t0008 a0013c0014t0003 a0016c0017t0004 a0017c0016t0004	8	HG01891.hp2 HG02451.hp1 HG02615.hp2 others(5): Show HG01891.hp2 HG02451.hp1 HG02615.hp2 HG02630.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-56A>C c.-56A>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	56		chrX	141589712
chrX:141589725	C C	G G	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-43C>G c.-43C>G	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	43		chrX	141589725
chrX:141589728	A A	C C	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-40A>C c.-40A>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	40		chrX	141589728
chrX:141589729	CA CA	C C	1	a0006c0006t0006 a0006c0006t0006	1	NA18965.hp1 NA18965.hp1	5_prime_UTR_variant	MODIFIER	c.-35delA c.-35delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	35	INFO_REALIGN_3_PRIME	chrX	141589729
chrX:141589734	G G	A A	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-34G>A c.-34G>A	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	34		chrX	141589734
chrX:141589738	G G	A A	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-30G>A c.-30G>A	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	30		chrX	141589738
chrX:141589740	C C	T T	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-28C>T c.-28C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	28		chrX	141589740
chrX:141589741	A A	G G	12	a0001c0001t0002 a0001c0001t0003 a0003c0003t0002 others(9): Show a0001c0001t0002 a0001c0001t0003 a0003c0003t0002 a0004c0004t0002 a0005c0005t0004 a0005c0005t0008 a0011c0011t0002 a0012c0013t0005 a0013c0014t0003 a0014c0007t0002 a0016c0017t0004 a0017c0016t0004	30	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(27): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01891.hp2 HG01943.hp1 HG01981.hp2 HG02083.hp1 HG02109.hp1 HG02132.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02738.hp1 HG02818.hp1 HG02895.hp1 HG03041.hp1 HG03098.hp1 HG03209.hp1 HG03486.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19079.hp2 NA19081.hp1 NA19240.hp1	5_prime_UTR_variant	MODIFIER	c.-27A>G c.-27A>G	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	27		chrX	141589741
chrX:141589742	C C	T T	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-26C>T c.-26C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2			chrX	141589742
chrX:141589743	T T	A A	6	a0001c0001t0003 a0005c0005t0004 a0005c0005t0008 others(3): Show a0001c0001t0003 a0005c0005t0004 a0005c0005t0008 a0013c0014t0003 a0016c0017t0004 a0017c0016t0004	7	HG01891.hp2 HG02451.hp1 HG02615.hp2 others(4): Show HG01891.hp2 HG02451.hp1 HG02615.hp2 HG02630.hp1 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-25T>A c.-25T>A	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	25		chrX	141589743
chrX:141589749	T T	C C	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	5_prime_UTR_variant	MODIFIER	c.-19T>C c.-19T>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/2	19		chrX	141589749
chrX:141590723	T T	C C	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.15T>C c.15T>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	15		chrX	141590723
chrX:141590729	C C	A A	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.21C>A c.21C>A	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	21		chrX	141590729
chrX:141590733	G G	C C	4	a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 others(1): Show a0005c0005t0004 a0005c0005t0008 a0016c0017t0004 a0017c0016t0004	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.25G>C c.25G>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	25		chrX	141590733
chrX:141590742	A A	C C	2	a0005c0005t0008 a0012c0013t0005 a0005c0005t0008 a0012c0013t0005	2	HG02280.hp1 HG03209.hp1 HG02280.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.34A>C c.34A>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	2/2	34		chrX	141590742

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:141589846	C C	T T	5	a0005c0005t0004g0009 a0005c0005t0008g0009 a0013c0014t0003g0022 others(2): Show a0005c0005t0004g0009 a0005c0005t0008g0009 a0013c0014t0003g0022 a0016c0017t0004g0008 a0017c0016t0004g0008	5	HG02451.hp1 HG02615.hp2 HG02818.hp1 others(2): Show HG02451.hp1 HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	splice_region_variant&intron_variant	LOW	c.72+7C>T c.72+7C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589846
chrX:141589856	C C	T T	4	a0005c0005t0004g0009 a0005c0005t0008g0009 a0016c0017t0004g0008 others(1): Show a0005c0005t0004g0009 a0005c0005t0008g0009 a0016c0017t0004g0008 a0017c0016t0004g0008	4	HG02615.hp2 HG02818.hp1 HG02895.hp1 others(1): Show HG02615.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1	intron_variant	MODIFIER	c.72+17C>T c.72+17C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589856
chrX:141589900	C C	T T	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA19070.hp1 NA19070.hp1	intron_variant	MODIFIER	c.72+61C>T c.72+61C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589900
chrX:141589944	T T	TG TG	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	NA18973.hp1 NA18973.hp1	intron_variant	MODIFIER	c.72+111dupG c.72+111dupG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141589944
chrX:141589950	G G	GC GC	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+114dupC c.72+114dupC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141589950
chrX:141589950	G G	GGC GGC	1	a0011c0011t0002g0019 a0011c0011t0002g0019	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.72+111_72+112insGC c.72+111_72+112insGC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589950
chrX:141589961	G G	GC GC	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+124dupC c.72+124dupC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141589961
chrX:141589984	G G	A A	6	a0002c0002t0001g0003 a0003c0003t0002g0011 a0005c0005t0004g0009 others(3): Show a0002c0002t0001g0003 a0003c0003t0002g0011 a0005c0005t0004g0009 a0005c0005t0008g0009 a0016c0017t0004g0008 a0017c0016t0004g0008	8	HG02109.hp1 HG02451.hp2 HG02615.hp2 others(5): Show HG02109.hp1 HG02451.hp2 HG02615.hp2 HG02630.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1 NA21309.hp2	intron_variant	MODIFIER	c.72+145G>A c.72+145G>A	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589984
chrX:141589985	G G	C C	6	a0002c0002t0001g0003 a0003c0003t0002g0011 a0005c0005t0004g0009 others(3): Show a0002c0002t0001g0003 a0003c0003t0002g0011 a0005c0005t0004g0009 a0005c0005t0008g0009 a0016c0017t0004g0008 a0017c0016t0004g0008	8	HG02109.hp1 HG02451.hp2 HG02615.hp2 others(5): Show HG02109.hp1 HG02451.hp2 HG02615.hp2 HG02630.hp2 HG02818.hp1 HG02895.hp1 HG03209.hp1 NA21309.hp2	intron_variant	MODIFIER	c.72+146G>C c.72+146G>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141589985
chrX:141589999	A A	AG AG	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+162dupG c.72+162dupG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141589999
chrX:141590040	CG CG	C C	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+203delG c.72+203delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590040
chrX:141590044	A A	G G	3	a0001c0001t0002g0004 a0001c0001t0003g0004 a0013c0014t0003g0022 a0001c0001t0002g0004 a0001c0001t0003g0004 a0013c0014t0003g0022	4	HG01891.hp2 HG02451.hp1 HG02630.hp1 others(1): Show HG01891.hp2 HG02451.hp1 HG02630.hp1 HG03486.hp2	intron_variant	MODIFIER	c.72+205A>G c.72+205A>G	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590044
chrX:141590075	TG TG	T T	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+238delG c.72+238delG	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590075
chrX:141590083	C C	T T	1	a0003c0003t0002g0011 a0003c0003t0002g0011	1	HG02109.hp1 HG02109.hp1	intron_variant	MODIFIER	c.72+244C>T c.72+244C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590083
chrX:141590085	C C	CT CT	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.72+251dupT c.72+251dupT	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590085
chrX:141590218	A A	AC AC	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.73-264dupC c.73-264dupC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590218
chrX:141590253	CA CA	C C	1	a0014c0007t0002g0018 a0014c0007t0002g0018	1	NA18982.hp1 NA18982.hp1	intron_variant	MODIFIER	c.73-230delA c.73-230delA	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590253
chrX:141590304	C C	G G	1	a0003c0003t0001g0007 a0003c0003t0001g0007	2	HG02258.hp1 HG03453.hp2 HG02258.hp1 HG03453.hp2	intron_variant	MODIFIER	c.73-183C>G c.73-183C>G	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590304
chrX:141590373	C C	T T	1	a0012c0013t0005g0017 a0012c0013t0005g0017	1	HG02280.hp1 HG02280.hp1	intron_variant	MODIFIER	c.73-114C>T c.73-114C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590373
chrX:141590374	A A	AC AC	1	a0015c0015t0001g0010 a0015c0015t0001g0010	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.73-113_73-112insC c.73-113_73-112insC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590374
chrX:141590382	TC TC	T T	1	a0006c0006t0006g0016 a0006c0006t0006g0016	1	NA18965.hp1 NA18965.hp1	intron_variant	MODIFIER	c.73-103delC c.73-103delC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590382
chrX:141590391	C C	T T	5	a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0007g0014 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0007g0014 a0005c0005t0004g0009 a0005c0005t0008g0009	5	HG01346.hp2 HG02145.hp1 HG02895.hp1 others(2): Show HG01346.hp2 HG02145.hp1 HG02895.hp1 HG02896.hp2 HG03209.hp1	intron_variant	MODIFIER	c.73-96C>T c.73-96C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590391
chrX:141590413	T T	C C	11	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0013 others(8): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0013 a0001c0001t0007g0014 a0002c0002t0001g0003 a0005c0005t0004g0009 a0005c0005t0008g0009 a0009c0010t0001g0005 a0012c0013t0005g0017 a0016c0017t0004g0008 a0017c0016t0004g0008	14	HG01175.hp2 HG01346.hp2 HG02280.hp1 others(11): Show HG01175.hp2 HG01346.hp2 HG02280.hp1 HG02451.hp2 HG02486.hp1 HG02615.hp2 HG02630.hp2 HG02698.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG03209.hp1 NA19010.hp2 NA21309.hp2	intron_variant	MODIFIER	c.73-74T>C c.73-74T>C	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590413
chrX:141590413	T T	TC TC	2	a0007c0008t0001g0012 a0011c0011t0002g0019 a0007c0008t0001g0012 a0011c0011t0002g0019	2	HG01943.hp1 NA18955.hp1 HG01943.hp1 NA18955.hp1	intron_variant	MODIFIER	c.73-70dupC c.73-70dupC	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrX	141590413
chrX:141590475	C C	T T	17	a0001c0001t0001g0006 a0001c0001t0007g0014 a0002c0002t0001g0003 others(14): Show a0001c0001t0001g0006 a0001c0001t0007g0014 a0002c0002t0001g0003 a0003c0003t0001g0002 a0003c0003t0001g0007 a0003c0003t0002g0002 a0003c0003t0002g0011 a0004c0004t0001g0002 a0004c0004t0002g0002 a0005c0005t0004g0009 a0005c0005t0008g0009 a0010c0012t0001g0002 a0011c0011t0002g0019 a0012c0013t0005g0017 a0014c0007t0002g0018 a0016c0017t0004g0008 a0017c0016t0004g0008	38	HG00408.hp2 HG00733.hp1 HG01109.hp1 others(35): Show HG00408.hp2 HG00733.hp1 HG01109.hp1 HG01358.hp1 HG01891.hp1 HG01943.hp1 HG01981.hp2 HG02109.hp1 HG02132.hp1 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02738.hp1 HG02818.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG03041.hp1 HG03098.hp1 HG03209.hp1 HG03453.hp1 HG03453.hp2 NA18966.hp1 NA18982.hp1 NA18994.hp1 NA19010.hp2 NA19030.hp2 NA19079.hp2 NA19081.hp1 NA19083.hp1 NA19240.hp1 NA19240.hp2 NA21309.hp2	intron_variant	MODIFIER	c.73-12C>T c.73-12C>T	SPANXA2	ENSG00000203926.5	transcript	ENST00000370518.4	protein_coding	1/1		chrX	141590475

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🧬 JoGo Online Haplotype Explorer SPANXA2_chrX_141584708_141595762

JoGo Local Haplotype Explorer (on iGV) SPANXA2_chrX_141584708_141595762

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 18)

CCoding Level Haplotype Info (Total: 18)

TTranscript Level Haplotype Info (Total: 9)

GGenebody Level Haplotype Info (Total: 23)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 18)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 24)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 34)

Haplotype Details by Sample (Haploid Level) (Total: 185)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 38)

CCoding Level Variants (Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 15)

GGenebody Level Haplotype Variants (Intron) (Total: 25)

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Annotation (Repeats)

Annotation (SNP Array)