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ALDH2_chr12_111761933_111822532 / BRCA1_chr17_43039295_43130364 etc.

  Error connecting to IGV?   VCX3A_chrX_6528618_6540118  VCX3A_chrX_6528618_6540118 (clean+top1000)

Multiple Alignments (by translate haplotype frequency)Multiple Alignments (by aa haplotype frequency) Multiple Alignments (by translate haplotype similarity)Multiple Alignments (by aa haplotype similarity)

Item Value
geneid 51481
ensemblid ENSG00000169059.13
hgncid 18159
symbol VCX3A
name variable charge X-linked 3A
refseq_nuc NM_016379.4
refseq_prot NP_057463.2
ensembl_nuc ENST00000381089.7
ensembl_prot ENSP00000370479.3
mane_status MANE Select
chr chrX
start 6533618
end 6535118
strand -
ver v1.2
region chrX:6533618-6535118
region5000 chrX:6528618-6540118
regionname0 VCX3A_chrX_6533618_6535118
regionname5000 VCX3A_chrX_6528618_6540118

ahapid grch38/
chm13v2 		alen total AFR AMR EAS EUR SAS JPT regionname genename aa chr start end
a0000 0/0 0 1 0 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001 0/0 206 27 13 2 7 1 4 6 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0002 0/0 186 7 7 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0003 0/0 216 5 5 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0004 1/0 186 4 1 0 0 2 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0005 0/0 196 3 3 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0006 0/0 206 3 0 0 3 0 0 2 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0007 0/0 186 2 2 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0008 0/0 186 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0009 0/0 186 1 0 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0010 0/0 206 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0011 0/0 216 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0012 0/0 206 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0013 0/0 216 1 0 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0014 0/0 206 1 0 0 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0015 0/0 166 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0016 0/0 206 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0017 0/0 206 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0018 0/0 256 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0019 0/0 196 1 0 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0020 0/0 246 1 0 0 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0021 0/1 216 1 0 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0022 0/0 216 1 0 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0023 0/0 236 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0024 0/0 186 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0025 0/0 226 1 0 0 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0026 0/0 94 1 0 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0027 0/0 186 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0028 0/0 296 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0029 0/0 206 1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118

chapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
c0001 0/0 621 19 5 2 7 1 4 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0002 0/0 621 8 8 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0003 0/0 561 7 7 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0004 0/0 651 5 5 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0005 1/0 561 4 1 0 0 2 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0006 0/0 591 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0007 0/0 621 3 0 0 3 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0008 0/0 561 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0009 0/0 621 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0010 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0011 0/0 651 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0012 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0013 0/0 651 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0014 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0015 0/0 561 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0016 0/0 501 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0017 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0018 0/0 620 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0019 0/0 681 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0020 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0021 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0022 0/0 651 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0023 0/0 711 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0024 0/1 651 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0025 0/0 741 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0026 0/0 591 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0027 0/0 771 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0028 0/0 562 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0029 0/0 891 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0030 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
c0031 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118

thapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
t0001 0/0 435 20 19 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0002 0/0 435 17 1 1 10 2 3 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0003 0/0 435 12 11 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0004 0/0 435 11 8 2 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0005 0/0 435 2 1 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0006 0/1 435 2 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0007 0/0 435 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0008 0/0 435 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0009 0/0 435 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0010 0/0 435 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0011 1/0 435 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0012 0/0 435 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0013 0/0 435 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0014 0/0 435 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0015 0/0 435 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
t0016 0/0 435 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118

ghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
g0001 0/0 6 0 1 3 1 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0002 0/0 5 5 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0003 0/0 4 2 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0004 0/0 4 4 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0005 0/0 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0006 0/0 3 0 0 2 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0007 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0008 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0009 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0010 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0011 0/0 2 0 0 2 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0012 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0013 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0014 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0015 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0016 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0017 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0018 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0019 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0020 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0021 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0022 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0023 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0024 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0025 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0026 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0027 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0028 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0029 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0030 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0031 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0032 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0033 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0034 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0035 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0036 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0037 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0038 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0039 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0040 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0041 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0042 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0043 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0044 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0045 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0046 1/0 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0047 0/0 1 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0048 0/1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0049 0/0 1 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
g0050 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118

achapid grch38/
chm13v2 		alen clen total AFR AMR EAS EUR SAS regionname genename cseq chr start end
a0000c0028 0/0 562 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0001 0/0 621 19 5 2 7 1 4 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0002 0/0 621 8 8 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0002c0003 0/0 561 7 7 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0003c0004 0/0 651 5 5 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0004c0005 1/0 561 4 1 0 0 2 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0005c0006 0/0 591 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0006c0007 0/0 621 3 0 0 3 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0007c0008 0/0 561 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0008c0010 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0009c0015 0/0 561 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0010c0014 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0011c0013 0/0 651 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0012c0012 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0013c0011 0/0 651 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0014c0009 0/0 621 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0015c0016 0/0 501 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0016c0017 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0017c0021 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0018c0027 0/0 771 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0019c0026 0/0 591 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0020c0025 0/0 741 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0021c0024 0/1 651 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0022c0022 0/0 651 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0023c0023 0/0 711 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0024c0020 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0025c0019 0/0 681 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0026c0018 0/0 620 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0027c0030 0/0 561 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0028c0029 0/0 891 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0029c0031 0/0 621 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118

acthapid grch38
chm13v2 		tlen total AFR AMR EAS EUR SAS regionname genename tseq chr start end
a0000c0028t0001 0/0 996 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0001t0001 0/0 1055 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0001t0002 0/0 1055 12 0 1 7 1 3 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0001t0004 0/0 1055 4 2 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0001t0007 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0002t0003 0/0 1055 7 7 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0001c0002t0016 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0002c0003t0001 0/0 995 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0002c0003t0004 0/0 995 4 4 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0003c0004t0001 0/0 1085 4 4 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0003c0004t0009 0/0 1085 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0004c0005t0002 0/0 995 2 1 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0004c0005t0005 0/0 995 1 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0004c0005t0011 1/0 995 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0005c0006t0001 0/0 1025 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0006c0007t0002 0/0 1055 2 0 0 2 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0006c0007t0015 0/0 1055 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0007c0008t0001 0/0 995 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0008c0010t0001 0/0 995 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0009c0015t0008 0/0 995 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0010c0014t0005 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0011c0013t0010 0/0 1085 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0012c0012t0001 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0013c0011t0012 0/0 1085 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0014c0009t0014 0/0 1055 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0015c0016t0003 0/0 935 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0016c0017t0004 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0017c0021t0003 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0018c0027t0001 0/0 1205 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0019c0026t0004 0/0 1025 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0020c0025t0006 0/0 1175 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0021c0024t0006 0/1 1085 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0022c0022t0003 0/0 1085 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0023c0023t0003 0/0 1145 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0024c0020t0003 0/0 995 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0025c0019t0002 0/0 1115 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0026c0018t0013 0/0 1054 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0027c0030t0001 0/0 995 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0028c0029t0001 0/0 1325 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118
a0029c0031t0004 0/0 1055 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A copy fasta chrX 6528618 6540118

actghapid grch38/
chm13v2 		total AFR AMR EAS EUR SAS regionname genename chr start end
a0000c0028t0001g0027 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0001g0014 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0001g0018 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0002g0001 0/0 6 0 1 3 1 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0002g0006 0/0 3 0 0 2 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0002g0039 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0002g0042 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0002g0043 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0004g0003 0/0 4 2 1 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0001t0007g0029 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0002t0003g0002 0/0 5 5 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0002t0003g0033 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0002t0003g0034 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0001c0002t0016g0050 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0002c0003t0001g0008 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0002c0003t0001g0021 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0002c0003t0004g0009 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0002c0003t0004g0010 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0003c0004t0001g0004 0/0 4 4 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0003c0004t0009g0028 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0004c0005t0002g0013 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0004c0005t0002g0049 0/0 1 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0004c0005t0005g0047 0/0 1 0 0 0 1 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0004c0005t0011g0046 1/0 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0005c0006t0001g0005 0/0 3 3 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0006c0007t0002g0011 0/0 2 0 0 2 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0006c0007t0015g0045 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0007c0008t0001g0007 0/0 2 2 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0008c0010t0001g0022 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0009c0015t0008g0016 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0010c0014t0005g0038 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0011c0013t0010g0015 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0012c0012t0001g0023 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0013c0011t0012g0012 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0014c0009t0014g0044 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0015c0016t0003g0030 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0016c0017t0004g0025 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0017c0021t0003g0036 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0018c0027t0001g0019 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0019c0026t0004g0024 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0020c0025t0006g0041 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0021c0024t0006g0048 0/1 1 0 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0022c0022t0003g0031 0/0 1 0 1 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0023c0023t0003g0032 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0024c0020t0003g0035 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0025c0019t0002g0040 0/0 1 0 0 1 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0026c0018t0013g0037 0/0 1 0 0 0 0 1 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0027c0030t0001g0020 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0028c0029t0001g0017 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
a0029c0031t0004g0026 0/0 1 1 0 0 0 0 VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118

sampleid ID
haplotypeid
 ahapid chapid thapid ghapid gpopname popname regionname genename chr start end
HG00140 hp1 a0001 c0001 t0002 g0001 EUR GBR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG00280 hp1 a0004 c0005 t0005 g0047 EUR FIN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG00609 hp1 a0006 c0007 t0002 g0011 EAS CHS VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01074 hp1 a0019 c0026 t0004 g0024 AMR PUR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01106 hp1 a0013 c0011 t0012 g0012 AMR PUR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01109 hp1 a0022 c0022 t0003 g0031 AMR PUR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01167 hp1 a0001 c0001 t0002 g0001 AMR PUR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01243 hp1 a0000 c0028 t0001 g0027 AMR PUR VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01884 hp1 a0027 c0030 t0001 g0020 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG01884 hp2 a0016 c0017 t0004 g0025 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02055 hp1 a0003 c0004 t0001 g0004 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02145 hp1 a0003 c0004 t0009 g0028 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02280 hp1 a0001 c0002 t0003 g0002 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02280 hp2 a0003 c0004 t0001 g0004 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02300 hp2 a0001 c0001 t0004 g0003 AMR PEL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02602 hp1 a0026 c0018 t0013 g0037 SAS PJL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02630 hp1 a0029 c0031 t0004 g0026 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02630 hp2 a0005 c0006 t0001 g0005 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02647 hp1 a0024 c0020 t0003 g0035 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02698 hp1 a0001 c0001 t0002 g0006 SAS PJL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02723 hp1 a0001 c0002 t0003 g0033 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02723 hp2 a0005 c0006 t0001 g0005 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02809 hp1 a0002 c0003 t0004 g0009 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02809 hp2 a0002 c0003 t0001 g0021 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02886 hp1 a0004 c0005 t0002 g0013 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02886 hp2 a0001 c0002 t0003 g0002 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02895 hp1 a0005 c0006 t0001 g0005 AFR GWD VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02922 hp1 a0002 c0003 t0001 g0008 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02922 hp2 a0001 c0001 t0007 g0029 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03098 hp1 a0001 c0002 t0003 g0002 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03130 hp1 a0015 c0016 t0003 g0030 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03139 hp1 a0007 c0008 t0001 g0007 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03209 hp1 a0001 c0001 t0004 g0003 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03225 hp1 a0002 c0003 t0004 g0009 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03453 hp1 a0002 c0003 t0004 g0010 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03453 hp2 a0011 c0013 t0010 g0015 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03486 hp1 a0023 c0023 t0003 g0032 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03486 hp2 a0001 c0002 t0003 g0034 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03490 hp1 a0001 c0001 t0002 g0043 SAS PJL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03516 hp1 a0002 c0003 t0001 g0008 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03516 hp2 a0028 c0029 t0001 g0017 AFR ESN VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03579 hp1 a0003 c0004 t0001 g0004 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG04199 hp1 a0001 c0001 t0004 g0003 SAS STU VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG04228 hp1 a0009 c0015 t0008 g0016 SAS STU VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18522 hp1 a0002 c0003 t0004 g0010 AFR YRI VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18747 hp1 a0001 c0001 t0002 g0001 EAS CHB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18944 hp1 a0006 c0007 t0002 g0011 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18952 hp1 a0001 c0001 t0002 g0042 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18953 hp1 a0014 c0009 t0014 g0044 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18983 hp1 a0001 c0001 t0002 g0006 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA18988 hp1 a0006 c0007 t0015 g0045 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19000 hp1 a0001 c0001 t0002 g0001 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19004 hp1 a0001 c0001 t0002 g0006 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19043 hp1 a0012 c0012 t0001 g0023 AFR LWK VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19056 hp1 a0025 c0019 t0002 g0040 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19079 hp1 a0020 c0025 t0006 g0041 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19087 hp1 a0001 c0001 t0002 g0039 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19087 hp2 a0001 c0001 t0002 g0001 EAS JPT VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19240 hp1 a0018 c0027 t0001 g0019 AFR YRI VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA19240 hp2 a0001 c0001 t0001 g0014 AFR YRI VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA20129 hp1 a0017 c0021 t0003 g0036 AFR ASW VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA20129 hp2 a0001 c0001 t0001 g0018 AFR ASW VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA20752 hp1 a0004 c0005 t0002 g0049 EUR TSI VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
NA20905 hp1 a0001 c0001 t0002 g0001 SAS GIH VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02109 hp1 a0001 c0002 t0016 g0050 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02109 hp2 a0001 c0002 t0003 g0002 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02486 hp1 a0001 c0001 t0004 g0003 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02559 hp1 a0001 c0002 t0003 g0002 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG02559 hp2 a0007 c0008 t0001 g0007 AFR ACB VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG03471 hp1 a0010 c0014 t0005 g0038 AFR MSL VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG06807 hp1 a0003 c0004 t0001 g0004 AFR USA VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
HG06807 hp2 a0008 c0010 t0001 g0022 AFR USA VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
homoSapiens_chm13v2 hp1 a0021 c0024 t0006 g0048 REF REF VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118
homoSapiens_grch38 hp1 a0004 c0005 t0011 g0046 REF REF VCX3A_chrX_6528618_6540118 VCX3A chrX 6528618 6540118

chr:pos ref alt #
# of ahapid:amino-acid(protein) level
 ahapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:6533758 A
A
 AGTTCTTC
others(83): Show 
AGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTCGCTCTC
CTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTG
 1 a0011
a0011
 1 HG03453.hp2
HG03453.hp2
 conservative_inframe_insertion MODERATE c.547_548insCACTGAGT
others(82): Show 
c.547_548insCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGT
CAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATGGAAGA
AC
 p.Glu182_Leu183insPr
others(88): Show 
p.Glu182_Leu183insProLeuSerGlnGluSerGlnValGluGluPr
oLeuSerGlnGluSerGluValGluGluProLeuSerGlnGluSerGluM
etGluGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 854/995 547/561 183/186 chrX 6533758
chrX:6533758 A
A
 AGTTCTTC
others(53): Show 
AGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTC
CTGACTCAGTG
 7 a0001
a0006
a0010
others(4): Show 
a0001
a0006
a0010
a0014
a0016
a0026
a0029
 27 HG00140.hp1
HG00609.hp1
HG01167.hp1
others(24): Show 
HG00140.hp1
HG00609.hp1
HG01167.hp1
HG01884.hp2
HG02300.hp2
HG02486.hp1
HG02602.hp1
HG02630.hp1
HG02698.hp1
HG02922.hp2
HG03209.hp1
HG03471.hp1
HG03490.hp1
HG04199.hp1
NA18747.hp1
NA18944.hp1
NA18952.hp1
NA18953.hp1
NA18983.hp1
NA18988.hp1
NA19000.hp1
NA19004.hp1
NA19087.hp1
NA19087.hp2
NA19240.hp2
NA20129.hp2
NA20905.hp1
 conservative_inframe_insertion MODERATE c.488_547dupCACTGAGT
others(52): Show 
c.488_547dupCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGT
CAGGAGAGCGAGATGGAAGAAC
 p.Pro163_Glu182dup
p.Pro163_Glu182dup
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 854/995 547/561 183/186 chrX 6533758
chrX:6533758 A
A
 AGTTCTTC
others(83): Show 
AGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTC
CTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTG
 1 a0021
a0021
 1 homoSapiens_chm13v2.hp1
homoSapiens_chm13v2.hp1
 conservative_inframe_insertion MODERATE c.547_548insCACTGAGT
others(82): Show 
c.547_548insCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGT
CAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATGGAAGA
AC
 p.Glu182_Leu183insPr
others(88): Show 
p.Glu182_Leu183insProLeuSerGlnGluSerGlnValGluGluPr
oLeuSerGlnGluSerGlnValGluGluProLeuSerGlnGluSerGluM
etGluGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 854/995 547/561 183/186 chrX 6533758
chrX:6533758 A
A
 AGTTCTTC
others(323): Show 
AGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTC
CTGACTCAGTGGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCA
CCTGGCTCTCCTGACTCAGTGGTTCCTCCACCTCGCTCTCCTGACTCAGT
GGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCTTCCACCTCGCTCTC
CTGACTCAGTGGTTCCTCCAGCTCGCTCTCCTGACTCAGTGGTTCCTCCA
CCTGGCTCTCCTGACTCAGTGGTTCCTCCACCTCGCTCTCCTGACTCAGT
GGTTCCTCCACCTGGCTCTCCTGACTCAGTG
 1 a0028
a0028
 1 HG03516.hp2
HG03516.hp2
 conservative_inframe_insertion MODERATE c.547_548insCACTGAGT
others(322): Show 
c.547_548insCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGT
CAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGA
ACCACTGAGTCAGGAGAGCGAGCTGGAGGAACCACTGAGTCAGGAGAGCG
AGGTGGAAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGT
CAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGA
ACCACTGAGTCAGGAGAGCGAGATGGAAGAACCACTGAGTCAGGAGAGCC
AGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATGGAAGAAC
 p.Glu182_Leu183insPr
others(328): Show 
p.Glu182_Leu183insProLeuSerGlnGluSerGlnValGluGluPr
oLeuSerGlnGluSerGluValGluGluProLeuSerGlnGluSerGlnV
alGluGluProLeuSerGlnGluSerGluLeuGluGluProLeuSerGln
GluSerGluValGluGluProLeuSerGlnGluSerGlnValGluGluPr
oLeuSerGlnGluSerGluValGluGluProLeuSerGlnGluSerGlnV
alGluGluProLeuSerGlnGluSerGluMetGluGluProLeuSerGln
GluSerGlnValGluGluProLeuSerGlnGluSerGluMetGluGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 854/995 547/561 183/186 chrX 6533758
chrX:6533763 T
T
 TTCCATCT
others(83): Show 
TTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTCGCTCTCCTGAC
TCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCC
 1 a0013
a0013
 1 HG01106.hp1
HG01106.hp1
 disruptive_inframe_insertion MODERATE c.542_543insGGAACCAC
others(82): Show 
c.542_543insGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATG
GA
 p.Glu181_Glu182insGl
others(88): Show 
p.Glu181_Glu182insGluProLeuSerGlnGluSerGlnValGluGl
uProLeuSerGlnGluSerGluValGluGluProLeuSerGlnGluSerG
luMetGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 849/995 542/561 181/186 chrX 6533763
chrX:6533768 T
T
 TCTCGCTC
others(23): Show 
TCTCGCTCTCCTGACTCAGTGGTTCCTCCAC
 1 a0005
a0005
 3 HG02630.hp2
HG02723.hp2
HG02895.hp1
HG02630.hp2
HG02723.hp2
HG02895.hp1
 conservative_inframe_insertion MODERATE c.508_537dupGTGGAGGA
others(22): Show 
c.508_537dupGTGGAGGAACCACTGAGTCAGGAGAGCGAG
 p.Glu179_Met180insVa
others(28): Show 
p.Glu179_Met180insValGluGluProLeuSerGlnGluSerGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 844/995 537/561 179/186 chrX 6533768
chrX:6533768 T
T
 TCTCGCTC
others(113): Show 
TCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGT
GGTTCTTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTC
CTGACTCAGTGGTTCCTCCAC
 1 a0025
a0025
 1 NA19056.hp1
NA19056.hp1
 conservative_inframe_insertion MODERATE c.537_538insGTGGAGGA
others(112): Show 
c.537_538insGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGA
ACCACTGAGTCAGGAGAGCGAGATGGAAGAACCACTGAGTCAGGAGAGCC
AGGTGGAGGAACCACTGAGTCAGGAGAGCGAG
 p.Glu179_Met180insVa
others(118): Show 
p.Glu179_Met180insValGluGluProLeuSerGlnGluSerGlnVa
lGluGluProLeuSerGlnGluSerGluMetGluGluProLeuSerGlnG
luSerGlnValGluGluProLeuSerGlnGluSerGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 844/995 537/561 179/186 chrX 6533768
chrX:6533771 C
C
 CGCTCTCC
others(23): Show 
CGCTCTCCTGACTCGGTGGTTCCTCCACCTG
 1 a0019
a0019
 1 HG01074.hp1
HG01074.hp1
 conservative_inframe_insertion MODERATE c.534_535insCAGGTGGA
others(22): Show 
c.534_535insCAGGTGGAGGAACCACCGAGTCAGGAGAGC
 p.Ser178_Glu179insGl
others(28): Show 
p.Ser178_Glu179insGlnValGluGluProProSerGlnGluSer
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 841/995 534/561 178/186 chrX 6533771
chrX:6533785 A
A
 G
G
 1 a0019
a0019
 1 HG01074.hp1
HG01074.hp1
 missense_variant MODERATE c.521T>C
c.521T>C
 p.Leu174Pro
p.Leu174Pro
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 828/995 521/561 174/186 chrX 6533785
chrX:6533798 C
C
 CCTCGCTC
others(53): Show 
CCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGT
GGTTCCTCCAT
 1 a0012
a0012
 1 NA19043.hp1
NA19043.hp1
 conservative_inframe_insertion MODERATE c.507_508insATGGAGGA
others(52): Show 
c.507_508insATGGAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGA
ACCACTGAGTCAGGAGAGCGAG
 p.Gln169_Val170insMe
others(58): Show 
p.Gln169_Val170insMetGluGluProLeuSerGlnGluSerGlnVa
lGluGluProLeuSerGlnGluSerGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 814/995 507/561 169/186 chrX 6533798
chrX:6533801 G
G
 C
C
 1 a0012
a0012
 1 NA19043.hp1
NA19043.hp1
 missense_variant MODERATE c.505C>G
c.505C>G
 p.Gln169Glu
p.Gln169Glu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 812/995 505/561 169/186 chrX 6533801
chrX:6533801 G
G
 GGCTCTCC
others(173): Show 
GGCTCTCCTGACTCAGTGGTTCTTCCATCTCGCTCTCCTGACTCAGTGGT
TCCTCCACCTGGCTCTCCTGACTCAGTGGTTCCTCCACCTCGCTCTCCTG
ACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCTTCCACCT
CGCTCTCCTGACTCAGTGGTTCCTCCACCTC
 1 a0020
a0020
 1 NA19079.hp1
NA19079.hp1
 conservative_inframe_insertion MODERATE c.504_505insGAGGTGGA
others(172): Show 
c.504_505insGAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGGTGGA
AGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGA
GCGAGGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTG
AGTCAGGAGAGCGAGATGGAAGAACCACTGAGTCAGGAGAGC
 p.Ser168_Gln169insGl
others(178): Show 
p.Ser168_Gln169insGluValGluGluProLeuSerGlnGluSerGl
uValGluGluProLeuSerGlnGluSerGlnValGluGluProLeuSerG
lnGluSerGluValGluGluProLeuSerGlnGluSerGlnValGluGlu
ProLeuSerGlnGluSerGluMetGluGluProLeuSerGlnGluSer
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 811/995 504/561 168/186 chrX 6533801
chrX:6533815 A
A
 G
G
 1 a0018
a0018
 1 NA19240.hp1
NA19240.hp1
 missense_variant MODERATE c.491T>C
c.491T>C
 p.Leu164Pro
p.Leu164Pro
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 798/995 491/561 164/186 chrX 6533815
chrX:6533823 C
C
 CTCCACCT
others(83): Show 
CTCCACCTGGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGAC
TCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCT
 1 a0022
a0022
 1 HG01109.hp1
HG01109.hp1
 disruptive_inframe_insertion MODERATE c.482_483insAGAACCAC
others(82): Show 
c.482_483insAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTG
GA
 p.Glu161_Glu162insGl
others(88): Show 
p.Glu161_Glu162insGluProLeuSerGlnGluSerGlnValGluGl
uProLeuSerGlnGluSerGlnValGluGluProLeuSerGlnGluSerG
lnValGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 789/995 482/561 161/186 chrX 6533823
chrX:6533823 C
C
 CTCCATCT
others(143): Show 
CTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGAC
TCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCCTCCACCTGG
CTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTC
T
 1 a0023
a0023
 1 HG03486.hp1
HG03486.hp1
 disruptive_inframe_insertion MODERATE c.482_483insAGAACCAC
others(142): Show 
c.482_483insAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCCAGGTG
GAGGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGA
GAGCGAGATGGA
 p.Glu161_Glu162insGl
others(148): Show 
p.Glu161_Glu162insGluProLeuSerGlnGluSerGlnValGluGl
uProLeuSerGlnGluSerGlnValGluGluProLeuSerGlnGluSerG
lnValGluGluProLeuSerGlnGluSerGlnValGluGluProLeuSer
GlnGluSerGluMetGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 789/995 482/561 161/186 chrX 6533823
chrX:6533823 C
C
 CTCCATCT
others(83): Show 
CTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGAC
TCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCT
 1 a0003
a0003
 5 HG02055.hp1
HG02145.hp1
HG02280.hp2
others(2): Show 
HG02055.hp1
HG02145.hp1
HG02280.hp2
HG03579.hp1
HG06807.hp1
 disruptive_inframe_insertion MODERATE c.482_483insAGAACCAC
others(82): Show 
c.482_483insAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATG
GA
 p.Glu161_Glu162insGl
others(88): Show 
p.Glu161_Glu162insGluProLeuSerGlnGluSerGlnValGluGl
uProLeuSerGlnGluSerGlnValGluGluProLeuSerGlnGluSerG
luMetGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 789/995 482/561 161/186 chrX 6533823
chrX:6533823 C
C
 CTCCATCT
others(53): Show 
CTCCATCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGAC
TCAGTGGTTCT
 2 a0001
a0017
a0001
a0017
 9 HG02109.hp1
HG02109.hp2
HG02280.hp1
others(6): Show 
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02723.hp1
HG02886.hp2
HG03098.hp1
HG03486.hp2
NA20129.hp1
 disruptive_inframe_insertion MODERATE c.482_483insAGAACCAC
others(52): Show 
c.482_483insAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCGAGATGGA
 p.Glu161_Glu162insGl
others(58): Show 
p.Glu161_Glu162insGluProLeuSerGlnGluSerGlnValGluGl
uProLeuSerGlnGluSerGluMetGlu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 789/995 482/561 161/186 chrX 6533823
chrX:6533823 CTCCACCT
others(53): Show 
CTCCACCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGAC
TCAGTGGTTCT
 C
C
 1 a0015
a0015
 1 HG03130.hp1
HG03130.hp1
 disruptive_inframe_deletion MODERATE c.423_482delAGAACCAC
others(52): Show 
c.423_482delAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGAACCAC
TGAGTCAGGAGAGCGAGGTGGA
 p.Glu142_Glu161del
p.Glu142_Glu161del
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 789/995 423/561 141/186 chrX 6533823
chrX:6533828 C
C
 CCTGGCTC
others(203): Show 
CCTGGCTCTCCTGACTCAGTGGTTCTTCCATCTCGCTCTCCTGACTCAGT
GGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCTTCCATCTCGCTCTC
CTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGTGGTTCCTCCA
CCTCGCTCTCCTGACTCAGTGGTTCCTCCACCTGGCTCTCCTGACTCAGT
GGTTCTTCCAT
 1 a0018
a0018
 1 NA19240.hp1
NA19240.hp1
 conservative_inframe_insertion MODERATE c.477_478insATGGAAGA
others(202): Show 
c.477_478insATGGAAGAACCACTGAGTCAGGAGAGCCAGGTGGAGGA
ACCACTGAGTCAGGAGAGCGAGGTGGAGGAACCACTGAGTCAGGAGAGCC
AGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATGGAAGAACCACTGAGT
CAGGAGAGCCAGGTGGAGGAACCACTGAGTCAGGAGAGCGAGATGGAAGA
ACCACTGAGTCAGGAGAGCCAG
 p.Glu159_Val160insMe
others(208): Show 
p.Glu159_Val160insMetGluGluProLeuSerGlnGluSerGlnVa
lGluGluProLeuSerGlnGluSerGluValGluGluProLeuSerGlnG
luSerGlnValGluGluProLeuSerGlnGluSerGluMetGluGluPro
LeuSerGlnGluSerGlnValGluGluProLeuSerGlnGluSerGluMe
tGluGluProLeuSerGlnGluSerGln
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 784/995 477/561 159/186 chrX 6533828
chrX:6533828 C
C
 T
T
 9 a0000
a0002
a0005
others(6): Show 
a0000
a0002
a0005
a0007
a0008
a0009
a0019
a0024
a0027
 18 HG01074.hp1
HG01243.hp1
HG01884.hp1
others(15): Show 
HG01074.hp1
HG01243.hp1
HG01884.hp1
HG02559.hp2
HG02630.hp2
HG02647.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02895.hp1
HG02922.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03516.hp1
HG04228.hp1
HG06807.hp2
NA18522.hp1
 missense_variant MODERATE c.478G>A
c.478G>A
 p.Val160Met
p.Val160Met
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 785/995 478/561 160/186 chrX 6533828
chrX:6533829 C
C
 G
G
 1 a0017
a0017
 1 NA20129.hp1
NA20129.hp1
 missense_variant MODERATE c.477G>C
c.477G>C
 p.Glu159Asp
p.Glu159Asp
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 784/995 477/561 159/186 chrX 6533829
chrX:6533831 C
C
 G
G
 1 a0012
a0012
 1 NA19043.hp1
NA19043.hp1
 missense_variant MODERATE c.475G>C
c.475G>C
 p.Glu159Gln
p.Glu159Gln
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 782/995 475/561 159/186 chrX 6533831
chrX:6533888 C
C
 T
T
 1 a0015
a0015
 1 HG03130.hp1
HG03130.hp1
 missense_variant MODERATE c.418G>A
c.418G>A
 p.Val140Met
p.Val140Met
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 725/995 418/561 140/186 chrX 6533888
chrX:6533944 T
T
 TC
TC
 1 a0000
a0000
 1 HG01243.hp1
HG01243.hp1
 frameshift_variant HIGH c.361dupG
c.361dupG
 p.Glu121fs
p.Glu121fs
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 668/995 361/561 121/186 chrX 6533944
chrX:6533983 C
C
 G
G
 1 a0024
a0024
 1 HG02647.hp1
HG02647.hp1
 missense_variant MODERATE c.323G>C
c.323G>C
 p.Ser108Thr
p.Ser108Thr
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 630/995 323/561 108/186 chrX 6533983
chrX:6533984 T
T
 C
C
 1 a0024
a0024
 1 HG02647.hp1
HG02647.hp1
 missense_variant MODERATE c.322A>G
c.322A>G
 p.Ser108Gly
p.Ser108Gly
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 629/995 322/561 108/186 chrX 6533984
chrX:6533995 A
A
 G
G
 8 a0006
a0007
a0008
others(5): Show 
a0006
a0007
a0008
a0013
a0014
a0024
a0025
a0028
 11 HG00609.hp1
HG01106.hp1
HG02559.hp2
others(8): Show 
HG00609.hp1
HG01106.hp1
HG02559.hp2
HG02647.hp1
HG03139.hp1
HG03516.hp2
HG06807.hp2
NA18944.hp1
NA18953.hp1
NA18988.hp1
NA19056.hp1
 missense_variant MODERATE c.311T>C
c.311T>C
 p.Leu104Pro
p.Leu104Pro
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 618/995 311/561 104/186 chrX 6533995
chrX:6534024 TG
TG
 T
T
 1 a0026
a0026
 1 HG02602.hp1
HG02602.hp1
 frameshift_variant HIGH c.281delC
c.281delC
 p.Pro94fs
p.Pro94fs
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 588/995 281/561 94/186 chrX 6534024
chrX:6534097 C
C
 G
G
 6 a0005
a0008
a0015
others(3): Show 
a0005
a0008
a0015
a0016
a0027
a0029
 8 HG01884.hp1
HG01884.hp2
HG02630.hp1
others(5): Show 
HG01884.hp1
HG01884.hp2
HG02630.hp1
HG02630.hp2
HG02723.hp2
HG02895.hp1
HG03130.hp1
HG06807.hp2
 missense_variant MODERATE c.209G>C
c.209G>C
 p.Gly70Ala
p.Gly70Ala
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 516/995 209/561 70/186 chrX 6534097
chrX:6534139 G
G
 A
A
 3 a0007
a0027
a0028
a0007
a0027
a0028
 4 HG01884.hp1
HG02559.hp2
HG03139.hp1
others(1): Show 
HG01884.hp1
HG02559.hp2
HG03139.hp1
HG03516.hp2
 missense_variant MODERATE c.167C>T
c.167C>T
 p.Ala56Val
p.Ala56Val
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 474/995 167/561 56/186 chrX 6534139
chrX:6534409 T
T
 C
C
 1 a0029
a0029
 1 HG02630.hp1
HG02630.hp1
 missense_variant MODERATE c.89A>G
c.89A>G
 p.Asp30Gly
p.Asp30Gly
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 396/995 89/561 30/186 chrX 6534409
chrX:6534449 C
C
 T
T
 1 a0014
a0014
 1 NA18953.hp1
NA18953.hp1
 missense_variant MODERATE c.49G>A
c.49G>A
 p.Ala17Thr
p.Ala17Thr
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 356/995 49/561 17/186 chrX 6534449
chrX:6534454 G
G
 T
T
 9 a0003
a0005
a0008
others(6): Show 
a0003
a0005
a0008
a0009
a0010
a0011
a0012
a0013
a0014
 15 HG01106.hp1
HG02055.hp1
HG02145.hp1
others(12): Show 
HG01106.hp1
HG02055.hp1
HG02145.hp1
HG02280.hp2
HG02630.hp2
HG02723.hp2
HG02895.hp1
HG03453.hp2
HG03471.hp1
HG03579.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18953.hp1
NA19043.hp1
 missense_variant MODERATE c.44C>A
c.44C>A
 p.Thr15Lys
p.Thr15Lys
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 351/995 44/561 15/186 chrX 6534454

chr:pos ref alt #
# of chapid
 chapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:6533823 C
C
 T
T
 8 a0000c0028
a0002c0003
a0007c0008
others(5): Show 
a0000c0028
a0002c0003
a0007c0008
a0009c0015
a0011c0013
a0013c0011
a0019c0026
a0027c0030
 15 HG01074.hp1
HG01106.hp1
HG01243.hp1
others(12): Show 
HG01074.hp1
HG01106.hp1
HG01243.hp1
HG01884.hp1
HG02559.hp2
HG02809.hp1
HG02809.hp2
HG02922.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03516.hp1
HG04228.hp1
NA18522.hp1
 synonymous_variant LOW c.483G>A
c.483G>A
 p.Glu161Glu
p.Glu161Glu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 790/995 483/561 161/186 chrX 6533823
chrX:6533883 T
T
 C
C
 7 a0000c0028
a0002c0003
a0007c0008
others(4): Show 
a0000c0028
a0002c0003
a0007c0008
a0009c0015
a0018c0027
a0019c0026
a0028c0029
 14 HG01074.hp1
HG01243.hp1
HG02559.hp2
others(11): Show 
HG01074.hp1
HG01243.hp1
HG02559.hp2
HG02809.hp1
HG02809.hp2
HG02922.hp1
HG03139.hp1
HG03225.hp1
HG03453.hp1
HG03516.hp1
HG03516.hp2
HG04228.hp1
NA18522.hp1
NA19240.hp1
 synonymous_variant LOW c.423A>G
c.423A>G
 p.Glu141Glu
p.Glu141Glu
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 730/995 423/561 141/186 chrX 6533883
chrX:6534105 C
C
 T
T
 2 a0007c0008
a0028c0029
a0007c0008
a0028c0029
 3 HG02559.hp2
HG03139.hp1
HG03516.hp2
HG02559.hp2
HG03139.hp1
HG03516.hp2
 synonymous_variant LOW c.201G>A
c.201G>A
 p.Ala67Ala
p.Ala67Ala
 VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 508/995 201/561 67/186 chrX 6534105

chr:pos ref alt #
# of thapid:transcript level
 thapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid transcript_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:6533647 T
T
 A
A
 3 a0011c0013t0010
a0020c0025t0006
a0021c0024t0006
a0011c0013t0010
a0020c0025t0006
a0021c0024t0006
 3 HG03453.hp2
NA19079.hp1
homoSapiens_chm13v2.hp1
HG03453.hp2
NA19079.hp1
homoSapiens_chm13v2.hp1
 3_prime_UTR_variant MODIFIER c.*98A>T
c.*98A>T
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 98 chrX 6533647
chrX:6533672 T
T
 C
C
 21 a0000c0028t0001
a0001c0001t0001
a0001c0002t0003
others(18): Show 
a0000c0028t0001
a0001c0001t0001
a0001c0002t0003
a0001c0002t0016
a0002c0003t0001
a0003c0004t0001
a0003c0004t0009
a0005c0006t0001
a0007c0008t0001
a0008c0010t0001
a0009c0015t0008
a0012c0012t0001
a0013c0011t0012
a0015c0016t0003
a0017c0021t0003
a0018c0027t0001
a0022c0022t0003
a0023c0023t0003
a0024c0020t0003
a0027c0030t0001
a0028c0029t0001
 36 HG01106.hp1
HG01109.hp1
HG01243.hp1
others(33): Show 
HG01106.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02559.hp1
HG02559.hp2
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*73A>G
c.*73A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 73 chrX 6533672
chrX:6533721 G
G
 A
A
 22 a0000c0028t0001
a0001c0001t0001
a0001c0002t0003
others(19): Show 
a0000c0028t0001
a0001c0001t0001
a0001c0002t0003
a0001c0002t0016
a0002c0003t0001
a0003c0004t0001
a0003c0004t0009
a0005c0006t0001
a0007c0008t0001
a0008c0010t0001
a0009c0015t0008
a0011c0013t0010
a0012c0012t0001
a0013c0011t0012
a0015c0016t0003
a0017c0021t0003
a0018c0027t0001
a0022c0022t0003
a0023c0023t0003
a0024c0020t0003
a0027c0030t0001
a0028c0029t0001
 37 HG01106.hp1
HG01109.hp1
HG01243.hp1
others(34): Show 
HG01106.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02559.hp1
HG02559.hp2
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*24C>T
c.*24C>T
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 24 chrX 6533721
chrX:6533736 G
G
 C
C
 27 a0000c0028t0001
a0001c0001t0001
a0001c0001t0004
others(24): Show 
a0000c0028t0001
a0001c0001t0001
a0001c0001t0004
a0001c0001t0007
a0001c0002t0003
a0001c0002t0016
a0002c0003t0001
a0002c0003t0004
a0003c0004t0001
a0003c0004t0009
a0005c0006t0001
a0007c0008t0001
a0008c0010t0001
a0009c0015t0008
a0011c0013t0010
a0012c0012t0001
a0015c0016t0003
a0016c0017t0004
a0017c0021t0003
a0018c0027t0001
a0019c0026t0004
a0022c0022t0003
a0023c0023t0003
a0024c0020t0003
a0027c0030t0001
a0028c0029t0001
a0029c0031t0004
 48 HG01074.hp1
HG01109.hp1
HG01243.hp1
others(45): Show 
HG01074.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG01884.hp2
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02559.hp2
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*9C>G
c.*9C>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 9 chrX 6533736
chrX:6533737 C
C
 T
T
 27 a0000c0028t0001
a0001c0001t0001
a0001c0001t0004
others(24): Show 
a0000c0028t0001
a0001c0001t0001
a0001c0001t0004
a0001c0001t0007
a0001c0002t0003
a0001c0002t0016
a0002c0003t0001
a0002c0003t0004
a0003c0004t0001
a0003c0004t0009
a0005c0006t0001
a0007c0008t0001
a0008c0010t0001
a0009c0015t0008
a0011c0013t0010
a0012c0012t0001
a0015c0016t0003
a0016c0017t0004
a0017c0021t0003
a0018c0027t0001
a0019c0026t0004
a0022c0022t0003
a0023c0023t0003
a0024c0020t0003
a0027c0030t0001
a0028c0029t0001
a0029c0031t0004
 48 HG01074.hp1
HG01109.hp1
HG01243.hp1
others(45): Show 
HG01074.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG01884.hp2
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02559.hp2
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 3_prime_UTR_variant MODIFIER c.*8G>A
c.*8G>A
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 8 chrX 6533737
chrX:6533743 G
G
 A
A
 1 a0026c0018t0013
a0026c0018t0013
 1 HG02602.hp1
HG02602.hp1
 3_prime_UTR_variant MODIFIER c.*2C>T
c.*2C>T
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 3/3 2 chrX 6533743
chrX:6534500 T
T
 G
G
 1 a0014c0009t0014
a0014c0009t0014
 1 NA18953.hp1
NA18953.hp1
 5_prime_UTR_variant MODIFIER c.-3A>C
c.-3A>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 3 chrX 6534500
chrX:6534528 A
A
 G
G
 3 a0003c0004t0009
a0004c0005t0005
a0010c0014t0005
a0003c0004t0009
a0004c0005t0005
a0010c0014t0005
 3 HG00280.hp1
HG02145.hp1
HG03471.hp1
HG00280.hp1
HG02145.hp1
HG03471.hp1
 5_prime_UTR_variant MODIFIER c.-31T>C
c.-31T>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 31 chrX 6534528
chrX:6534563 C
C
 A
A
 18 a0001c0001t0002
a0001c0002t0003
a0001c0002t0016
others(15): Show 
a0001c0001t0002
a0001c0002t0003
a0001c0002t0016
a0004c0005t0002
a0004c0005t0005
a0006c0007t0002
a0006c0007t0015
a0010c0014t0005
a0014c0009t0014
a0015c0016t0003
a0017c0021t0003
a0020c0025t0006
a0021c0024t0006
a0022c0022t0003
a0023c0023t0003
a0024c0020t0003
a0025c0019t0002
a0026c0018t0013
 37 HG00140.hp1
HG00280.hp1
HG00609.hp1
others(34): Show 
HG00140.hp1
HG00280.hp1
HG00609.hp1
HG01109.hp1
HG01167.hp1
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02602.hp1
HG02647.hp1
HG02698.hp1
HG02723.hp1
HG02886.hp1
HG02886.hp2
HG03098.hp1
HG03130.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
NA18747.hp1
NA18944.hp1
NA18952.hp1
NA18953.hp1
NA18983.hp1
NA18988.hp1
NA19000.hp1
NA19004.hp1
NA19056.hp1
NA19079.hp1
NA19087.hp1
NA19087.hp2
NA20129.hp1
NA20752.hp1
NA20905.hp1
homoSapiens_chm13v2.hp1
 5_prime_UTR_variant MODIFIER c.-66G>T
c.-66G>T
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 66 chrX 6534563
chrX:6534588 A
A
 G
G
 2 a0001c0001t0007
a0009c0015t0008
a0001c0001t0007
a0009c0015t0008
 2 HG02922.hp2
HG04228.hp1
HG02922.hp2
HG04228.hp1
 5_prime_UTR_variant MODIFIER c.-91T>C
c.-91T>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 91 chrX 6534588
chrX:6534613 T
T
 C
C
 1 a0006c0007t0015
a0006c0007t0015
 1 NA18988.hp1
NA18988.hp1
 5_prime_UTR_variant MODIFIER c.-116A>G
c.-116A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/3 116 chrX 6534613
chrX:6534998 T
T
 C
C
 1 a0001c0002t0016
a0001c0002t0016
 1 HG02109.hp1
HG02109.hp1
 5_prime_UTR_variant MODIFIER c.-187A>G
c.-187A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/3 501 chrX 6534998

chr:pos ref alt #
# of ghapid:genebody level
 ghapids #
# of haplotypeids
 haplotypeids annotation impact hgvs_c hgvs_p genename geneid featuretype featureid genebody_biotype rank cdna
cdna pos length
 cds
cds pos length
 aa
aa pos length
 distance status chr pos
chrX:6534237 CT
CT
 C
C
 1 a0000c0028t0001g0027
a0000c0028t0001g0027
 1 HG01243.hp1
HG01243.hp1
 intron_variant MODIFIER c.103-35delA
c.103-35delA
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534237
chrX:6534238 T
T
 C
C
 24 a0001c0001t0001g0014
a0001c0001t0001g0018
a0001c0001t0002g0042
others(21): Show 
a0001c0001t0001g0014
a0001c0001t0001g0018
a0001c0001t0002g0042
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0002c0003t0001g0008
a0002c0003t0001g0021
a0003c0004t0001g0004
a0003c0004t0009g0028
a0005c0006t0001g0005
a0008c0010t0001g0022
a0009c0015t0008g0016
a0010c0014t0005g0038
a0012c0012t0001g0023
a0015c0016t0003g0030
a0017c0021t0003g0036
a0018c0027t0001g0019
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0027c0030t0001g0020
a0029c0031t0004g0026
 34 HG01109.hp1
HG01884.hp1
HG02055.hp1
others(31): Show 
HG01109.hp1
HG01884.hp1
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02559.hp1
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG03098.hp1
HG03130.hp1
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03579.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18952.hp1
NA19043.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.103-35A>G
c.103-35A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534238
chrX:6534239 G
G
 C
C
 1 a0000c0028t0001g0027
a0000c0028t0001g0027
 1 HG01243.hp1
HG01243.hp1
 intron_variant MODIFIER c.103-36C>G
c.103-36C>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534239
chrX:6534262 G
G
 C
C
 2 a0001c0001t0002g0043
a0011c0013t0010g0015
a0001c0001t0002g0043
a0011c0013t0010g0015
 2 HG03453.hp2
HG03490.hp1
HG03453.hp2
HG03490.hp1
 intron_variant MODIFIER c.103-59C>G
c.103-59C>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534262
chrX:6534315 C
C
 G
G
 43 a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
others(40): Show 
a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
a0001c0001t0002g0006
a0001c0001t0002g0042
a0001c0001t0002g0043
a0001c0001t0004g0003
a0001c0001t0007g0029
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0002c0003t0001g0008
a0002c0003t0001g0021
a0002c0003t0004g0009
a0002c0003t0004g0010
a0003c0004t0001g0004
a0003c0004t0009g0028
a0005c0006t0001g0005
a0006c0007t0002g0011
a0006c0007t0015g0045
a0007c0008t0001g0007
a0008c0010t0001g0022
a0009c0015t0008g0016
a0010c0014t0005g0038
a0011c0013t0010g0015
a0012c0012t0001g0023
a0013c0011t0012g0012
a0014c0009t0014g0044
a0015c0016t0003g0030
a0016c0017t0004g0025
a0017c0021t0003g0036
a0018c0027t0001g0019
a0019c0026t0004g0024
a0020c0025t0006g0041
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0025c0019t0002g0040
a0026c0018t0013g0037
a0027c0030t0001g0020
a0028c0029t0001g0017
a0029c0031t0004g0026
 62 HG00609.hp1
HG01074.hp1
HG01106.hp1
others(59): Show 
HG00609.hp1
HG01074.hp1
HG01106.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG01884.hp2
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02559.hp2
HG02602.hp1
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02698.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA18944.hp1
NA18952.hp1
NA18953.hp1
NA18983.hp1
NA18988.hp1
NA19004.hp1
NA19043.hp1
NA19056.hp1
NA19079.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.102+81G>C
c.102+81G>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534315
chrX:6534326 C
C
 G
G
 30 a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
others(27): Show 
a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
a0001c0001t0002g0006
a0001c0001t0002g0042
a0001c0001t0002g0043
a0001c0001t0007g0029
a0001c0002t0003g0033
a0002c0003t0001g0008
a0002c0003t0004g0009
a0003c0004t0001g0004
a0003c0004t0009g0028
a0005c0006t0001g0005
a0006c0007t0002g0011
a0006c0007t0015g0045
a0007c0008t0001g0007
a0008c0010t0001g0022
a0009c0015t0008g0016
a0011c0013t0010g0015
a0012c0012t0001g0023
a0013c0011t0012g0012
a0014c0009t0014g0044
a0018c0027t0001g0019
a0019c0026t0004g0024
a0020c0025t0006g0041
a0022c0022t0003g0031
a0023c0023t0003g0032
a0025c0019t0002g0040
a0027c0030t0001g0020
a0028c0029t0001g0017
 41 HG00609.hp1
HG01074.hp1
HG01106.hp1
others(38): Show 
HG00609.hp1
HG01074.hp1
HG01106.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG02055.hp1
HG02145.hp1
HG02280.hp2
HG02559.hp2
HG02630.hp2
HG02698.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03139.hp1
HG03225.hp1
HG03453.hp2
HG03486.hp1
HG03490.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18944.hp1
NA18952.hp1
NA18953.hp1
NA18983.hp1
NA18988.hp1
NA19004.hp1
NA19043.hp1
NA19056.hp1
NA19079.hp1
NA19240.hp1
NA19240.hp2
NA20129.hp2
 intron_variant MODIFIER c.102+70G>C
c.102+70G>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534326
chrX:6534342 T
T
 C
C
 5 a0001c0002t0003g0002
a0001c0002t0016g0050
a0015c0016t0003g0030
others(2): Show 
a0001c0002t0003g0002
a0001c0002t0016g0050
a0015c0016t0003g0030
a0017c0021t0003g0036
a0024c0020t0003g0035
 9 HG02109.hp1
HG02109.hp2
HG02280.hp1
others(6): Show 
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02647.hp1
HG02886.hp2
HG03098.hp1
HG03130.hp1
NA20129.hp1
 intron_variant MODIFIER c.102+54A>G
c.102+54A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534342
chrX:6534359 A
A
 AG
AG
 1 a0001c0001t0002g0039
a0001c0001t0002g0039
 1 NA19087.hp1
NA19087.hp1
 intron_variant MODIFIER c.102+36dupC
c.102+36dupC
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 2/2 chrX 6534359
chrX:6534649 T
T
 C
C
 21 a0001c0001t0001g0014
a0001c0001t0004g0003
a0001c0001t0007g0029
others(18): Show 
a0001c0001t0001g0014
a0001c0001t0004g0003
a0001c0001t0007g0029
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0002c0003t0004g0009
a0002c0003t0004g0010
a0005c0006t0001g0005
a0008c0010t0001g0022
a0011c0013t0010g0015
a0012c0012t0001g0023
a0015c0016t0003g0030
a0016c0017t0004g0025
a0017c0021t0003g0036
a0019c0026t0004g0024
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0029c0031t0004g0026
 32 HG01074.hp1
HG01109.hp1
HG01884.hp2
others(29): Show 
HG01074.hp1
HG01109.hp1
HG01884.hp2
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02886.hp2
HG02895.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
HG04199.hp1
HG06807.hp2
NA18522.hp1
NA19043.hp1
NA19240.hp2
NA20129.hp1
 splice_region_variant&intron_variant LOW c.-146-6A>G
c.-146-6A>G
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534649
chrX:6534681 C
C
 G
G
 9 a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
others(6): Show 
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0015c0016t0003g0030
a0017c0021t0003g0036
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
 13 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(10): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02647.hp1
HG02723.hp1
HG02886.hp2
HG03098.hp1
HG03130.hp1
HG03486.hp1
HG03486.hp2
NA20129.hp1
 intron_variant MODIFIER c.-146-38G>C
c.-146-38G>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534681
chrX:6534704 CG
CG
 C
C
 1 a0000c0028t0001g0027
a0000c0028t0001g0027
 1 HG01243.hp1
HG01243.hp1
 intron_variant MODIFIER c.-146-62delC
c.-146-62delC
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534704
chrX:6534710 C
C
 CG
CG
 11 a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
others(8): Show 
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0011c0013t0010g0015
a0015c0016t0003g0030
a0017c0021t0003g0036
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0026c0018t0013g0037
 15 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(12): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02602.hp1
HG02647.hp1
HG02723.hp1
HG02886.hp2
HG03098.hp1
HG03130.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
NA20129.hp1
 intron_variant MODIFIER c.-146-68dupC
c.-146-68dupC
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534710
chrX:6534710 CG
CG
 C
C
 2 a0003c0004t0001g0004
a0003c0004t0009g0028
a0003c0004t0001g0004
a0003c0004t0009g0028
 5 HG02055.hp1
HG02145.hp1
HG02280.hp2
others(2): Show 
HG02055.hp1
HG02145.hp1
HG02280.hp2
HG03579.hp1
HG06807.hp1
 intron_variant MODIFIER c.-146-68delC
c.-146-68delC
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534710
chrX:6534717 G
G
 GA
GA
 1 a0001c0001t0007g0029
a0001c0001t0007g0029
 1 HG02922.hp2
HG02922.hp2
 intron_variant MODIFIER c.-146-75_-146-74ins
others(1): Show 
c.-146-75_-146-74insT
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534717
chrX:6534810 A
A
 AC
AC
 1 a0015c0016t0003g0030
a0015c0016t0003g0030
 1 HG03130.hp1
HG03130.hp1
 intron_variant MODIFIER c.-147+147dupG
c.-147+147dupG
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534810
chrX:6534851 T
T
 G
G
 9 a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
others(6): Show 
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0015c0016t0003g0030
a0017c0021t0003g0036
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
 13 HG01109.hp1
HG02109.hp1
HG02109.hp2
others(10): Show 
HG01109.hp1
HG02109.hp1
HG02109.hp2
HG02280.hp1
HG02559.hp1
HG02647.hp1
HG02723.hp1
HG02886.hp2
HG03098.hp1
HG03130.hp1
HG03486.hp1
HG03486.hp2
NA20129.hp1
 intron_variant MODIFIER c.-147+107A>C
c.-147+107A>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534851
chrX:6534871 C
C
 G
G
 46 a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
others(43): Show 
a0000c0028t0001g0027
a0001c0001t0001g0014
a0001c0001t0001g0018
a0001c0001t0002g0001
a0001c0001t0002g0006
a0001c0001t0002g0039
a0001c0001t0002g0042
a0001c0001t0002g0043
a0001c0001t0004g0003
a0001c0001t0007g0029
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0002c0003t0001g0008
a0002c0003t0001g0021
a0002c0003t0004g0009
a0002c0003t0004g0010
a0003c0004t0001g0004
a0003c0004t0009g0028
a0004c0005t0002g0013
a0005c0006t0001g0005
a0006c0007t0002g0011
a0006c0007t0015g0045
a0007c0008t0001g0007
a0008c0010t0001g0022
a0009c0015t0008g0016
a0010c0014t0005g0038
a0011c0013t0010g0015
a0012c0012t0001g0023
a0013c0011t0012g0012
a0014c0009t0014g0044
a0015c0016t0003g0030
a0016c0017t0004g0025
a0017c0021t0003g0036
a0018c0027t0001g0019
a0019c0026t0004g0024
a0020c0025t0006g0041
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0025c0019t0002g0040
a0026c0018t0013g0037
a0027c0030t0001g0020
a0028c0029t0001g0017
a0029c0031t0004g0026
 70 HG00140.hp1
HG00609.hp1
HG01074.hp1
others(67): Show 
HG00140.hp1
HG00609.hp1
HG01074.hp1
HG01106.hp1
HG01109.hp1
HG01167.hp1
HG01243.hp1
HG01884.hp1
HG01884.hp2
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02559.hp2
HG02602.hp1
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02698.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02886.hp1
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03471.hp1
HG03486.hp1
HG03486.hp2
HG03490.hp1
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA18747.hp1
NA18944.hp1
NA18952.hp1
NA18953.hp1
NA18983.hp1
NA18988.hp1
NA19000.hp1
NA19004.hp1
NA19043.hp1
NA19056.hp1
NA19079.hp1
NA19087.hp1
NA19087.hp2
NA19240.hp1
NA19240.hp2
NA20129.hp1
NA20129.hp2
NA20905.hp1
 intron_variant MODIFIER c.-147+87G>C
c.-147+87G>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534871
chrX:6534933 A
A
 G
G
 32 a0000c0028t0001g0027
a0001c0001t0001g0018
a0001c0001t0004g0003
others(29): Show 
a0000c0028t0001g0027
a0001c0001t0001g0018
a0001c0001t0004g0003
a0001c0001t0007g0029
a0001c0002t0003g0002
a0001c0002t0003g0033
a0001c0002t0003g0034
a0001c0002t0016g0050
a0002c0003t0001g0008
a0002c0003t0001g0021
a0002c0003t0004g0009
a0002c0003t0004g0010
a0003c0004t0001g0004
a0003c0004t0009g0028
a0005c0006t0001g0005
a0007c0008t0001g0007
a0008c0010t0001g0022
a0009c0015t0008g0016
a0011c0013t0010g0015
a0012c0012t0001g0023
a0013c0011t0012g0012
a0015c0016t0003g0030
a0016c0017t0004g0025
a0017c0021t0003g0036
a0018c0027t0001g0019
a0019c0026t0004g0024
a0022c0022t0003g0031
a0023c0023t0003g0032
a0024c0020t0003g0035
a0027c0030t0001g0020
a0028c0029t0001g0017
a0029c0031t0004g0026
 48 HG01074.hp1
HG01106.hp1
HG01109.hp1
others(45): Show 
HG01074.hp1
HG01106.hp1
HG01109.hp1
HG01243.hp1
HG01884.hp1
HG01884.hp2
HG02055.hp1
HG02109.hp1
HG02109.hp2
HG02145.hp1
HG02280.hp1
HG02280.hp2
HG02300.hp2
HG02486.hp1
HG02559.hp1
HG02559.hp2
HG02630.hp1
HG02630.hp2
HG02647.hp1
HG02723.hp1
HG02723.hp2
HG02809.hp1
HG02809.hp2
HG02886.hp2
HG02895.hp1
HG02922.hp1
HG02922.hp2
HG03098.hp1
HG03130.hp1
HG03139.hp1
HG03209.hp1
HG03225.hp1
HG03453.hp1
HG03453.hp2
HG03486.hp1
HG03486.hp2
HG03516.hp1
HG03516.hp2
HG03579.hp1
HG04199.hp1
HG04228.hp1
HG06807.hp1
HG06807.hp2
NA18522.hp1
NA19043.hp1
NA19240.hp1
NA20129.hp1
NA20129.hp2
 intron_variant MODIFIER c.-147+25T>C
c.-147+25T>C
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534933
chrX:6534957 C
C
 T
T
 4 a0001c0001t0001g0014
a0001c0002t0016g0050
a0004c0005t0002g0013
others(1): Show 
a0001c0001t0001g0014
a0001c0002t0016g0050
a0004c0005t0002g0013
a0013c0011t0012g0012
 4 HG01106.hp1
HG02109.hp1
HG02886.hp1
others(1): Show 
HG01106.hp1
HG02109.hp1
HG02886.hp1
NA19240.hp2
 splice_donor_variant&intron_variant HIGH c.-147+1G>A
c.-147+1G>A
VCX3A ENSG00000169059.13 transcript ENST00000381089.7 protein_coding 1/2 chrX 6534957

  • GeneCards
  • OpenTarget
  • The Human Protein Atlas
  • Gnomad v4.1.0
  • PhewebJP (Japan)
  • UKB-TOPMed (UMich) (UK and US)
  • FinnGen r11 (Finland)
  • KoGES (Korean)
  • Mouse Phenotype
  • Zebra Phenotype
  • TogoVar

  • DNA
  • Satellite
  • All Snps 1.4.2
  • RC
  • snRNA
  • SINE
  • GC %
  • Simple_repeat
  • RNA
  • Retroposon
  • Unknown
  • Low_complexity
  • LINE
  • scRNA
  • CpG Islands
  • Phastcons (20 way)
  • srpRNA
  • Common Snps 1.4.2
  • rRNA
  • LTR
  • tRNA

  • Axiom Genome-Wide Array (Japonica Array V1)
  • Axiom Genome-Wide Array (Japonica Array V2)
  • Axiom Genome-Wide ASI Array V1 (ASI V1)
​

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