Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	28985
ensemblid	ENSG00000232119.8
hgncid	23357
symbol	MCTS1
name	MCTS1 re-initiation and release factor
refseq_nuc	NM_014060.3
refseq_prot	NP_054779.1
ensembl_nuc	ENST00000371317.10
ensembl_prot	ENSP00000360367.5
mane_status	MANE Select
chr	chrX
start	120604101
end	120621159
strand	+
ver	v1.2
region	chrX:120604101-120621159
region5000	chrX:120599101-120626159
regionname0	MCTS1_chrX_120604101_120621159
regionname5000	MCTS1_chrX_120599101_120626159

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	181	315	76	48	154	9	26	121	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0002	0/0	121	1	0	0	1	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	546	315	76	48	154	9	26	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
c0002	0/0	548	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	9032	57	4	12	34	4	3	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0002	0/0	9029	56	9	9	36	0	2	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0003	0/0	9031	28	0	8	11	1	8	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0004	0/0	9029	20	0	2	18	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0005	0/0	9030	11	10	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0006	0/0	9028	10	9	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0007	0/0	9029	7	5	2	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0008	0/0	9028	7	1	0	5	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0009	0/0	9031	6	1	0	5	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0010	0/0	9032	6	0	0	6	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0011	0/0	9030	4	0	1	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0012	0/0	9034	4	0	2	0	1	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0013	0/0	9030	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0014	0/0	9028	3	0	2	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0015	0/0	9028	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0016	0/0	9032	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0017	0/0	9031	3	2	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0018	0/0	9034	3	1	0	1	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0019	0/0	9032	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0020	0/0	9028	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0021	0/0	9030	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0022	0/0	9030	2	1	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0023	0/0	9027	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0024	0/0	9032	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0025	0/1	9032	2	0	0	0	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0026	0/0	9032	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0027	0/0	9033	2	0	0	0	0	2	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0028	0/0	9032	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0029	0/0	9032	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0030	0/0	9037	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0031	0/0	9027	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0032	0/0	9033	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0033	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0034	0/0	9027	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0035	0/0	9021	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0036	0/0	9031	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0037	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0038	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0039	0/0	9028	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0040	0/0	9030	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0041	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0042	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0043	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0044	0/0	9028	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0045	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0046	0/0	9028	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0047	0/0	9029	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0048	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0049	0/0	9031	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0050	0/0	9030	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0051	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0052	0/0	9027	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0053	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0054	0/0	9026	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0055	0/0	9030	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0056	0/0	9030	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0057	0/0	9022	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0058	0/0	9031	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0059	0/0	9031	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0060	0/0	9031	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0061	0/0	9032	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0062	0/0	9035	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0063	0/0	9021	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0064	0/0	9034	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0065	0/0	9031	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0066	0/0	9032	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0067	0/0	9025	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0068	1/0	9032	1	0	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0069	0/0	9032	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0070	0/0	9031	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0071	0/0	9029	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0072	0/0	9033	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0073	0/0	9032	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0074	0/0	9032	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0075	0/0	9033	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0076	0/0	9031	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0077	0/0	9029	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0078	0/0	9032	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0079	0/0	9032	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0080	0/0	9031	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0081	0/0	9032	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0082	0/0	9032	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0083	0/0	9031	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0084	0/0	9033	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0085	0/0	9032	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0086	0/0	9034	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0087	0/0	9047	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0088	0/0	9012	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
t0089	0/0	9029	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	84	12	14	46	7	4	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0002	0/0	66	9	9	45	1	2	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0003	0/0	39	10	5	23	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0004	0/0	36	0	10	14	1	11	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0005	0/0	16	15	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0006	0/0	10	3	0	6	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0007	0/0	5	0	1	2	0	2	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0008	0/1	4	0	2	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0009	0/0	3	1	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0010	0/0	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0011	0/0	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0012	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0013	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0014	0/0	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0015	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0016	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0017	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0018	0/0	2	0	2	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0019	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0020	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0021	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0022	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0023	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0024	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0025	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0026	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0027	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0028	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0029	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0030	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0031	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0032	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0033	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0034	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0035	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0036	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0037	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0038	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0039	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0040	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0041	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0042	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0043	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0044	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0045	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0046	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0047	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0048	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
g0049	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	546	315	76	48	154	9	26	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0002c0002	0/0	548	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	9577	57	4	12	34	4	3	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0002	0/0	9574	56	9	9	36	0	2	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0003	0/0	9576	28	0	8	11	1	8	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0004	0/0	9574	20	0	2	18	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0005	0/0	9575	11	10	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0006	0/0	9573	10	9	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0007	0/0	9574	7	5	2	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0008	0/0	9573	7	1	0	5	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0009	0/0	9576	6	1	0	5	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0010	0/0	9577	6	0	0	6	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0011	0/0	9575	4	0	1	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0012	0/0	9579	4	0	2	0	1	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0013	0/0	9575	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0014	0/0	9573	3	0	2	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0015	0/0	9573	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0016	0/0	9577	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0017	0/0	9576	3	2	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0018	0/0	9579	3	1	0	1	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0019	0/0	9577	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0020	0/0	9573	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0021	0/0	9575	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0022	0/0	9575	2	1	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0023	0/0	9572	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0024	0/0	9577	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0025	0/1	9577	2	0	0	0	1	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0026	0/0	9577	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0027	0/0	9578	2	0	0	0	0	2	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0028	0/0	9577	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0029	0/0	9577	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0030	0/0	9582	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0031	0/0	9572	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0032	0/0	9578	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0033	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0034	0/0	9572	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0035	0/0	9566	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0036	0/0	9576	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0037	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0038	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0039	0/0	9573	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0040	0/0	9575	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0041	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0042	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0043	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0044	0/0	9573	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0045	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0046	0/0	9573	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0047	0/0	9574	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0048	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0049	0/0	9576	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0050	0/0	9575	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0051	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0052	0/0	9572	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0053	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0054	0/0	9571	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0055	0/0	9575	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0056	0/0	9575	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0057	0/0	9567	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0058	0/0	9576	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0059	0/0	9576	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0060	0/0	9576	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0061	0/0	9577	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0063	0/0	9566	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0064	0/0	9579	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0065	0/0	9576	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0066	0/0	9577	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0067	0/0	9570	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0068	1/0	9577	1	0	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0069	0/0	9577	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0070	0/0	9576	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0071	0/0	9574	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0072	0/0	9578	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0073	0/0	9577	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0074	0/0	9577	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0075	0/0	9578	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0076	0/0	9576	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0077	0/0	9574	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0078	0/0	9577	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0079	0/0	9577	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0080	0/0	9576	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0081	0/0	9577	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0082	0/0	9577	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0083	0/0	9576	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0084	0/0	9578	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0085	0/0	9577	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0086	0/0	9579	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0087	0/0	9592	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0088	0/0	9557	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0001c0001t0089	0/0	9574	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159
a0002c0002t0062	0/0	9582	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	copy fasta	chrX	120599101	120626159

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	41	2	10	24	4	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0006	0/0	6	2	0	3	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0008	0/0	3	0	2	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0011	0/0	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0036	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0002	0/0	46	6	8	30	0	2	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0007	0/0	3	0	1	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0009	0/0	3	1	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0012	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0029	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0002g0032	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0003g0004	0/0	27	0	8	11	1	7	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0003g0024	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0004g0003	0/0	17	0	2	15	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0004g0026	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0004g0031	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0004g0043	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0005g0005	0/0	7	6	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0005g0010	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0005g0017	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0006g0001	0/0	8	8	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0006g0044	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0006g0048	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0007g0003	0/0	6	4	2	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0007g0042	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0008g0002	0/0	6	0	0	5	1	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0008g0003	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0009g0001	0/0	4	1	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0009g0006	0/0	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0010g0001	0/0	4	0	0	4	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0010g0021	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0010g0041	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0011g0002	0/0	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0011g0030	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0012g0001	0/0	4	0	2	0	1	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0013g0005	0/0	3	3	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0014g0002	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0014g0007	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0014g0022	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0015g0020	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0015g0047	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0016g0001	0/0	3	0	0	3	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0017g0003	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0017g0049	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0018g0001	0/0	1	0	0	0	1	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0018g0006	0/0	2	1	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0019g0014	0/0	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0020g0003	0/0	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0021g0005	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0022g0003	0/0	2	1	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0023g0013	0/0	2	2	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0024g0004	0/0	2	0	0	1	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0025g0001	0/0	1	0	0	0	1	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0025g0008	0/1	1	0	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0026g0001	0/0	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0027g0001	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0027g0037	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0028g0016	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0028g0040	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0029g0001	0/0	2	0	0	2	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0030g0005	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0031g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0032g0004	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0033g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0034g0003	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0035g0019	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0036g0005	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0037g0005	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0038g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0039g0035	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0040g0004	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0041g0004	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0042g0005	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0043g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0044g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0045g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0046g0003	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0047g0003	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0048g0002	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0049g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0050g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0051g0002	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0052g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0053g0002	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0054g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0055g0010	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0056g0007	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0057g0019	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0058g0004	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0059g0004	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0060g0004	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0061g0046	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0063g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0064g0001	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0065g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0066g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0067g0001	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0068g0001	1/0	1	0	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0069g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0070g0033	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0071g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0072g0015	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0073g0015	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0074g0023	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0075g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0076g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0077g0016	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0078g0001	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0079g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0080g0018	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0081g0018	0/0	1	0	1	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0082g0034	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0083g0002	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0084g0004	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0085g0028	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0086g0001	0/0	1	0	0	0	0	1	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0087g0045	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0088g0003	0/0	1	1	0	0	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0001c0001t0089g0001	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
a0002c0002t0062g0027	0/0	1	0	0	1	0	0	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00280	hp1	a0001	c0001	t0025	g0001	EUR	FIN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00323	hp1	a0001	c0001	t0008	g0002	EUR	FIN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00323	hp2	a0001	c0001	t0003	g0004	EUR	FIN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00408	hp1	a0001	c0001	t0003	g0004	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00408	hp2	a0001	c0001	t0083	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00423	hp1	a0001	c0001	t0004	g0003	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00423	hp2	a0001	c0001	t0001	g0006	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00438	hp1	a0001	c0001	t0052	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00544	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00544	hp2	a0001	c0001	t0001	g0011	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00558	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00558	hp2	a0001	c0001	t0001	g0006	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00609	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00621	hp1	a0001	c0001	t0002	g0002	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00639	hp1	a0001	c0001	t0003	g0004	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00639	hp2	a0001	c0001	t0017	g0049	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00642	hp1	a0001	c0001	t0011	g0030	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00673	hp1	a0001	c0001	t0019	g0014	EAS	CHS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00733	hp2	a0001	c0001	t0004	g0003	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00741	hp1	a0001	c0001	t0012	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG00741	hp2	a0001	c0001	t0003	g0004	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01069	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01074	hp1	a0001	c0001	t0064	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01099	hp1	a0001	c0001	t0003	g0004	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01106	hp1	a0001	c0001	t0001	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01109	hp1	a0001	c0001	t0007	g0003	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01167	hp1	a0001	c0001	t0007	g0003	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01168	hp1	a0001	c0001	t0080	g0018	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01168	hp2	a0001	c0001	t0012	g0001	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01169	hp1	a0001	c0001	t0022	g0003	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01169	hp2	a0001	c0001	t0081	g0018	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01175	hp1	a0001	c0001	t0058	g0004	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01175	hp2	a0001	c0001	t0003	g0004	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01192	hp1	a0001	c0001	t0002	g0002	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01243	hp1	a0001	c0001	t0005	g0005	AMR	PUR	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01256	hp1	a0001	c0001	t0001	g0008	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01261	hp1	a0001	c0001	t0002	g0002	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01346	hp2	a0001	c0001	t0002	g0002	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01358	hp1	a0001	c0001	t0002	g0007	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01361	hp2	a0001	c0001	t0002	g0002	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01433	hp1	a0001	c0001	t0002	g0002	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01496	hp1	a0001	c0001	t0001	g0008	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01496	hp2	a0001	c0001	t0006	g0044	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01516	hp1	a0001	c0001	t0018	g0001	EUR	IBS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01516	hp2	a0001	c0001	t0012	g0001	EUR	IBS	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01884	hp1	a0001	c0001	t0017	g0003	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01884	hp2	a0001	c0001	t0005	g0005	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01891	hp1	a0001	c0001	t0042	g0005	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01891	hp2	a0001	c0001	t0018	g0006	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01934	hp1	a0001	c0001	t0004	g0003	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01943	hp1	a0001	c0001	t0067	g0001	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01978	hp1	a0001	c0001	t0003	g0004	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01978	hp2	a0001	c0001	t0001	g0001	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01993	hp1	a0001	c0001	t0014	g0002	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01993	hp2	a0001	c0001	t0003	g0004	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02015	hp1	a0001	c0001	t0026	g0001	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02027	hp1	a0001	c0001	t0004	g0003	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02040	hp1	a0001	c0001	t0049	g0002	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02055	hp1	a0001	c0001	t0057	g0019	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02071	hp1	a0001	c0001	t0003	g0004	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02074	hp1	a0001	c0001	t0033	g0002	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02080	hp1	a0001	c0001	t0003	g0004	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02080	hp2	a0001	c0001	t0031	g0003	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02083	hp1	a0001	c0001	t0003	g0004	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02129	hp1	a0001	c0001	t0002	g0032	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02132	hp1	a0001	c0001	t0002	g0029	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02135	hp1	a0001	c0001	t0001	g0025	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02145	hp1	a0001	c0001	t0028	g0040	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02155	hp1	a0001	c0001	t0009	g0001	EAS	CDX	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02155	hp2	a0001	c0001	t0079	g0001	EAS	CDX	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02165	hp1	a0001	c0001	t0002	g0002	EAS	CDX	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02257	hp1	a0001	c0001	t0087	g0045	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02257	hp2	a0001	c0001	t0005	g0017	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02258	hp1	a0001	c0001	t0005	g0005	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02273	hp1	a0001	c0001	t0014	g0022	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02273	hp2	a0001	c0001	t0003	g0004	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02280	hp1	a0001	c0001	t0007	g0003	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02280	hp2	a0001	c0001	t0002	g0002	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02293	hp1	a0001	c0001	t0003	g0004	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02293	hp2	a0001	c0001	t0002	g0002	AMR	PEL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02451	hp1	a0001	c0001	t0088	g0003	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02451	hp2	a0001	c0001	t0001	g0006	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02523	hp1	a0001	c0001	t0003	g0004	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02523	hp2	a0001	c0001	t0069	g0001	EAS	KHV	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02572	hp1	a0001	c0001	t0006	g0001	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02602	hp1	a0001	c0001	t0003	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02615	hp1	a0001	c0001	t0007	g0042	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02615	hp2	a0001	c0001	t0007	g0003	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02622	hp1	a0001	c0001	t0022	g0003	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02622	hp2	a0001	c0001	t0015	g0047	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02630	hp1	a0001	c0001	t0006	g0048	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02630	hp2	a0001	c0001	t0036	g0005	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02647	hp1	a0001	c0001	t0072	g0015	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02683	hp1	a0001	c0001	t0002	g0002	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02683	hp2	a0001	c0001	t0003	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02698	hp1	a0001	c0001	t0084	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02717	hp1	a0001	c0001	t0021	g0005	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02723	hp1	a0001	c0001	t0023	g0013	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02723	hp2	a0001	c0001	t0013	g0005	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02735	hp1	a0001	c0001	t0003	g0024	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02738	hp1	a0001	c0001	t0027	g0037	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02809	hp1	a0001	c0001	t0005	g0005	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02809	hp2	a0001	c0001	t0006	g0001	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02818	hp1	a0001	c0001	t0008	g0003	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02818	hp2	a0001	c0001	t0039	g0035	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02895	hp1	a0001	c0001	t0002	g0002	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02896	hp1	a0001	c0001	t0002	g0012	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02896	hp2	a0001	c0001	t0037	g0005	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02897	hp1	a0001	c0001	t0002	g0012	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02897	hp2	a0001	c0001	t0002	g0009	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02922	hp1	a0001	c0001	t0035	g0019	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02922	hp2	a0001	c0001	t0005	g0010	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02965	hp1	a0001	c0001	t0006	g0001	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02970	hp1	a0001	c0001	t0002	g0002	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02970	hp2	a0001	c0001	t0005	g0005	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02976	hp1	a0001	c0001	t0005	g0005	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02976	hp2	a0001	c0001	t0034	g0003	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03017	hp1	a0001	c0001	t0003	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03041	hp1	a0001	c0001	t0006	g0001	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03041	hp2	a0001	c0001	t0007	g0003	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03098	hp1	a0001	c0001	t0021	g0005	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03130	hp1	a0001	c0001	t0002	g0002	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03139	hp1	a0001	c0001	t0006	g0001	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03195	hp1	a0001	c0001	t0002	g0002	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03195	hp2	a0001	c0001	t0013	g0005	AFR	ESN	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03209	hp1	a0001	c0001	t0055	g0010	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03225	hp1	a0001	c0001	t0015	g0020	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03486	hp1	a0001	c0001	t0073	g0015	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03486	hp2	a0001	c0001	t0053	g0002	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03490	hp1	a0001	c0001	t0040	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03540	hp1	a0001	c0001	t0006	g0001	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03540	hp2	a0001	c0001	t0005	g0017	AFR	GWD	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03579	hp1	a0001	c0001	t0006	g0001	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03654	hp1	a0001	c0001	t0002	g0002	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03688	hp1	a0001	c0001	t0024	g0004	SAS	STU	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03704	hp1	a0001	c0001	t0059	g0004	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03704	hp2	a0001	c0001	t0014	g0007	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03710	hp1	a0001	c0001	t0012	g0001	SAS	PJL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03834	hp1	a0001	c0001	t0046	g0003	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03834	hp2	a0001	c0001	t0003	g0004	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03927	hp1	a0001	c0001	t0001	g0006	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03927	hp2	a0001	c0001	t0003	g0004	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03942	hp1	a0001	c0001	t0019	g0014	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04115	hp1	a0001	c0001	t0027	g0001	SAS	STU	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04184	hp1	a0001	c0001	t0056	g0007	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04184	hp2	a0001	c0001	t0003	g0004	SAS	BEB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04199	hp1	a0001	c0001	t0001	g0036	SAS	STU	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04204	hp1	a0001	c0001	t0003	g0004	SAS	STU	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG04228	hp1	a0001	c0001	t0061	g0046	SAS	STU	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18522	hp1	a0001	c0001	t0005	g0005	AFR	YRI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18612	hp1	a0001	c0001	t0002	g0002	EAS	CHB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18747	hp1	a0001	c0001	t0016	g0001	EAS	CHB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18906	hp1	a0001	c0001	t0051	g0002	AFR	YRI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18906	hp2	a0001	c0001	t0005	g0010	AFR	YRI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18939	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18940	hp1	a0001	c0001	t0050	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18941	hp1	a0001	c0001	t0001	g0008	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18941	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18942	hp1	a0001	c0001	t0010	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18943	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18945	hp1	a0001	c0001	t0008	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18946	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18946	hp2	a0001	c0001	t0043	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18947	hp1	a0001	c0001	t0060	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18947	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18948	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18949	hp1	a0001	c0001	t0029	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18949	hp2	a0001	c0001	t0010	g0021	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18951	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18951	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18952	hp1	a0001	c0001	t0010	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18953	hp1	a0001	c0001	t0002	g0009	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18954	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18956	hp1	a0001	c0001	t0018	g0006	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18956	hp2	a0001	c0001	t0024	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18957	hp1	a0001	c0001	t0001	g0038	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18957	hp2	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18959	hp1	a0001	c0001	t0002	g0009	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18960	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18961	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18962	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18963	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18964	hp1	a0001	c0001	t0076	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18964	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18965	hp1	a0001	c0001	t0004	g0043	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18966	hp1	a0001	c0001	t0009	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18967	hp1	a0001	c0001	t0010	g0041	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18968	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18969	hp1	a0001	c0001	t0063	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18969	hp2	a0001	c0001	t0041	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18970	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18971	hp1	a0001	c0001	t0016	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18972	hp1	a0001	c0001	t0010	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18972	hp2	a0001	c0001	t0089	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18973	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18973	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18974	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18975	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18975	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18977	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18978	hp1	a0001	c0001	t0075	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18978	hp2	a0001	c0001	t0001	g0011	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18980	hp1	a0001	c0001	t0008	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18980	hp2	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18982	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18983	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18985	hp1	a0002	c0002	t0062	g0027	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18986	hp1	a0001	c0001	t0054	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18989	hp1	a0001	c0001	t0044	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18990	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18994	hp1	a0001	c0001	t0011	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18995	hp1	a0001	c0001	t0009	g0006	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18998	hp1	a0001	c0001	t0001	g0039	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18999	hp1	a0001	c0001	t0009	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18999	hp2	a0001	c0001	t0011	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19000	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19002	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19002	hp2	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19005	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19006	hp1	a0001	c0001	t0004	g0031	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19009	hp1	a0001	c0001	t0002	g0007	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19010	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19010	hp2	a0001	c0001	t0009	g0006	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19011	hp1	a0001	c0001	t0002	g0007	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19012	hp1	a0001	c0001	t0011	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19030	hp1	a0001	c0001	t0013	g0005	AFR	LWK	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19030	hp2	a0001	c0001	t0017	g0003	AFR	LWK	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19043	hp1	a0001	c0001	t0077	g0016	AFR	LWK	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19055	hp1	a0001	c0001	t0066	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19056	hp1	a0001	c0001	t0008	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19057	hp1	a0001	c0001	t0020	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19057	hp2	a0001	c0001	t0001	g0006	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19058	hp1	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19060	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19062	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19063	hp1	a0001	c0001	t0065	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19064	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19064	hp2	a0001	c0001	t0029	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19065	hp1	a0001	c0001	t0026	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19065	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19067	hp1	a0001	c0001	t0004	g0026	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19068	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19070	hp1	a0001	c0001	t0071	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19075	hp1	a0001	c0001	t0008	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19076	hp1	a0001	c0001	t0074	g0023	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19077	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19077	hp2	a0001	c0001	t0010	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19078	hp1	a0001	c0001	t0008	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19078	hp2	a0001	c0001	t0003	g0004	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19079	hp1	a0001	c0001	t0047	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19080	hp1	a0001	c0001	t0016	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19080	hp2	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19081	hp1	a0001	c0001	t0020	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19081	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19084	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19084	hp2	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19088	hp1	a0001	c0001	t0004	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19090	hp1	a0001	c0001	t0001	g0011	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19090	hp2	a0001	c0001	t0045	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19091	hp1	a0001	c0001	t0038	g0003	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19240	hp1	a0001	c0001	t0002	g0002	AFR	YRI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20129	hp1	a0001	c0001	t0015	g0020	AFR	ASW	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20129	hp2	a0001	c0001	t0030	g0005	AFR	ASW	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20905	hp1	a0001	c0001	t0086	g0001	SAS	GIH	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01123	hp1	a0001	c0001	t0002	g0002	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG01123	hp2	a0001	c0001	t0032	g0004	AMR	CLM	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02109	hp1	a0001	c0001	t0007	g0003	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02109	hp2	a0001	c0001	t0001	g0006	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02486	hp1	a0001	c0001	t0070	g0033	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02559	hp1	a0001	c0001	t0048	g0002	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG02559	hp2	a0001	c0001	t0009	g0001	AFR	ACB	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG03471	hp1	a0001	c0001	t0028	g0016	AFR	MSL	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG06807	hp1	a0001	c0001	t0006	g0001	AFR	USA	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
HG06807	hp2	a0001	c0001	t0078	g0001	AFR	USA	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA18955	hp1	a0001	c0001	t0002	g0002	EAS	JPT	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20300	hp1	a0001	c0001	t0023	g0013	AFR	USA	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA21309	hp1	a0001	c0001	t0082	g0034	AFR	LWK	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
NA21309	hp2	a0001	c0001	t0085	g0028	AFR	LWK	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
homoSapiens_chm13v2	hp1	a0001	c0001	t0025	g0008	REF	REF	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159
homoSapiens_grch38	hp1	a0001	c0001	t0068	g0001	REF	REF	MCTS1_chrX_120599101_120626159	MCTS1	chrX	120599101	120626159

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:120608280	C C	CA CA	1	a0002 a0002	1	NA18985.hp1 NA18985.hp1	frameshift_variant	HIGH	c.319dupA c.319dupA	p.Ser107fs p.Ser107fs	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/6	456/9577	320/546	107/181		INFO_REALIGN_3_PRIME	chrX	120608280
chrX:120612204	T T	TG TG	1	a0002 a0002	1	NA18985.hp1 NA18985.hp1	frameshift_variant	HIGH	c.488dupG c.488dupG	p.Ile164fs p.Ile164fs	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	625/9577	489/546	163/181		INFO_REALIGN_3_PRIME	chrX	120612204

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:120612491	C C	T T	2	a0001c0001t0029 a0001c0001t0089 a0001c0001t0029 a0001c0001t0089	3	NA18949.hp1 NA18972.hp2 NA19064.hp2 NA18949.hp1 NA18972.hp2 NA19064.hp2	3_prime_UTR_variant	MODIFIER	c.227C>T c.227C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	227		chrX	120612491
chrX:120612660	C C	CGT CGT	3	a0001c0001t0012 a0001c0001t0018 a0001c0001t0086 a0001c0001t0012 a0001c0001t0018 a0001c0001t0086	8	HG00741.hp1 HG01168.hp2 HG01516.hp1 others(5): Show HG00741.hp1 HG01168.hp2 HG01516.hp1 HG01516.hp2 HG01891.hp2 HG03710.hp1 NA18956.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.421_422dupGT c.421_422dupGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423	INFO_REALIGN_3_PRIME	chrX	120612660
chrX:120612660	C C	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	1	a0001c0001t0087 a0001c0001t0087	1	HG02257.hp1 HG02257.hp1	3_prime_UTR_variant	MODIFIER	c.409_422dupGTGTGT others(8): Show c.409_422dupGTGTGTGTGTGTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423	INFO_REALIGN_3_PRIME	chrX	120612660
chrX:120612660	CGT CGT	C C	4	a0001c0001t0013 a0001c0001t0019 a0001c0001t0031 others(1): Show a0001c0001t0013 a0001c0001t0019 a0001c0001t0031 a0001c0001t0032	7	HG00673.hp1 HG01123.hp2 HG02080.hp2 others(4): Show HG00673.hp1 HG01123.hp2 HG02080.hp2 HG02723.hp2 HG03195.hp2 HG03942.hp1 NA19030.hp1	3_prime_UTR_variant	MODIFIER	c.421_422delGT c.421_422delGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	421	INFO_REALIGN_3_PRIME	chrX	120612660
chrX:120612667	GTGTGTGT others(13): Show GTGTGTGTGTGTGTGTGTGTA	G G	1	a0001c0001t0088 a0001c0001t0088	1	HG02451.hp1 HG02451.hp1	3_prime_UTR_variant	MODIFIER	c.423_442delATGTGT others(14): Show c.423_442delATGTGTGTGTGTGTGTGTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423	INFO_REALIGN_3_PRIME	chrX	120612667
chrX:120612675	GTGTGTGT others(5): Show GTGTGTGTGTGTA	G G	1	a0001c0001t0063 a0001c0001t0063	1	NA18969.hp1 NA18969.hp1	3_prime_UTR_variant	MODIFIER	c.423_434delATGTGT others(6): Show c.423_434delATGTGTGTGTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423	INFO_REALIGN_3_PRIME	chrX	120612675
chrX:120612681	G G	GTGTA GTGTA	1	a0001c0001t0030 a0001c0001t0030	1	NA20129.hp2 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.420_421insATGT c.420_421insATGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	421	INFO_REALIGN_3_PRIME	chrX	120612681
chrX:120612683	GTGTA GTGTA	G G	44	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(41): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0002c0002t0062	179	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(176): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp2 HG01891.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.423_426delATGT c.423_426delATGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423	INFO_REALIGN_3_PRIME	chrX	120612683
chrX:120612687	A A	ATG ATG	1	a0001c0001t0064 a0001c0001t0064	1	HG01074.hp1 HG01074.hp1	3_prime_UTR_variant	MODIFIER	c.447_448dupGT c.447_448dupGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	449	INFO_REALIGN_3_PRIME	chrX	120612687
chrX:120612687	A A	G G	2	a0001c0001t0030 a0001c0001t0087 a0001c0001t0030 a0001c0001t0087	2	HG02257.hp1 NA20129.hp2 HG02257.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.423A>G c.423A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	423		chrX	120612687
chrX:120612687	ATG ATG	A A	6	a0001c0001t0017 a0001c0001t0080 a0001c0001t0081 others(3): Show a0001c0001t0017 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084	8	HG00408.hp2 HG00639.hp2 HG01168.hp1 others(5): Show HG00408.hp2 HG00639.hp2 HG01168.hp1 HG01169.hp2 HG01884.hp1 HG02698.hp1 NA19030.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.447_448delGT c.447_448delGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	447	INFO_REALIGN_3_PRIME	chrX	120612687
chrX:120612687	ATGTG ATGTG	A A	2	a0001c0001t0006 a0001c0001t0085 a0001c0001t0006 a0001c0001t0085	11	HG01496.hp2 HG02572.hp1 HG02630.hp1 others(8): Show HG01496.hp2 HG02572.hp1 HG02630.hp1 HG02809.hp2 HG02965.hp1 HG03041.hp1 HG03139.hp1 HG03540.hp1 HG03579.hp1 HG06807.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.445_448delGTGT c.445_448delGTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	445	INFO_REALIGN_3_PRIME	chrX	120612687
chrX:120612689	G G	A A	44	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(41): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0002c0002t0062	179	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(176): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp2 HG01891.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02723.hp1 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp2 NA18970.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.425G>A c.425G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	425		chrX	120612689
chrX:120612697	G G	A A	1	a0001c0001t0063 a0001c0001t0063	1	NA18969.hp1 NA18969.hp1	3_prime_UTR_variant	MODIFIER	c.433G>A c.433G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	433		chrX	120612697
chrX:120612730	T T	TA TA	1	a0001c0001t0033 a0001c0001t0033	1	HG02074.hp1 HG02074.hp1	3_prime_UTR_variant	MODIFIER	c.474dupA c.474dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	475	INFO_REALIGN_3_PRIME	chrX	120612730
chrX:120612812	AG AG	A A	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.549delG c.549delG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	549		chrX	120612812
chrX:120612865	A A	AC AC	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.607dupC c.607dupC	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	608	INFO_REALIGN_3_PRIME	chrX	120612865
chrX:120612928	C C	CT CT	8	a0001c0001t0003 a0001c0001t0024 a0001c0001t0032 others(5): Show a0001c0001t0003 a0001c0001t0024 a0001c0001t0032 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0084 a0001c0001t0087	36	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(33): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01978.hp1 HG01993.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02257.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 NA18947.hp1 NA18951.hp2 NA18956.hp2 NA18974.hp1 NA18975.hp1 NA19010.hp1 NA19058.hp1 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.680dupT c.680dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	681	INFO_REALIGN_3_PRIME	chrX	120612928
chrX:120612928	C C	CTT CTT	1	a0001c0001t0061 a0001c0001t0061	1	HG04228.hp1 HG04228.hp1	3_prime_UTR_variant	MODIFIER	c.679_680dupTT c.679_680dupTT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	681	INFO_REALIGN_3_PRIME	chrX	120612928
chrX:120612928	CT CT	C C	6	a0001c0001t0014 a0001c0001t0020 a0001c0001t0034 others(3): Show a0001c0001t0014 a0001c0001t0020 a0001c0001t0034 a0001c0001t0035 a0001c0001t0065 a0001c0001t0080	9	HG01168.hp1 HG01993.hp1 HG02273.hp1 others(6): Show HG01168.hp1 HG01993.hp1 HG02273.hp1 HG02922.hp1 HG02976.hp2 HG03704.hp2 NA19057.hp1 NA19063.hp1 NA19081.hp1	3_prime_UTR_variant	MODIFIER	c.680delT c.680delT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	680	INFO_REALIGN_3_PRIME	chrX	120612928
chrX:120612959	C C	T T	2	a0001c0001t0019 a0001c0001t0085 a0001c0001t0019 a0001c0001t0085	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.695C>T c.695C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	695		chrX	120612959
chrX:120612989	C C	CG CG	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.726dupG c.726dupG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	727	INFO_REALIGN_3_PRIME	chrX	120612989
chrX:120613156	C C	G G	2	a0001c0001t0015 a0001c0001t0087 a0001c0001t0015 a0001c0001t0087	4	HG02257.hp1 HG02622.hp2 HG03225.hp1 others(1): Show HG02257.hp1 HG02622.hp2 HG03225.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.892C>G c.892C>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	892		chrX	120613156
chrX:120613204	G G	T T	4	a0001c0001t0015 a0001c0001t0035 a0001c0001t0057 others(1): Show a0001c0001t0015 a0001c0001t0035 a0001c0001t0057 a0001c0001t0087	6	HG02055.hp1 HG02257.hp1 HG02622.hp2 others(3): Show HG02055.hp1 HG02257.hp1 HG02622.hp2 HG02922.hp1 HG03225.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.940G>T c.940G>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	940		chrX	120613204
chrX:120613216	G G	A A	1	a0001c0001t0066 a0001c0001t0066	1	NA19055.hp1 NA19055.hp1	3_prime_UTR_variant	MODIFIER	c.952G>A c.952G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	952		chrX	120613216
chrX:120613318	T T	G G	1	a0001c0001t0025 a0001c0001t0025	2	HG00280.hp1 homoSapiens_chm13v2.hp1 HG00280.hp1 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.1054T>G c.1054T>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1054		chrX	120613318
chrX:120613433	T T	C C	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.1169T>C c.1169T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1169		chrX	120613433
chrX:120613535	TAA TAA	T T	1	a0001c0001t0023 a0001c0001t0023	2	HG02723.hp1 NA20300.hp1 HG02723.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.1272_1273delAA c.1272_1273delAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1272		chrX	120613535
chrX:120613774	T T	TC TC	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.1514dupC c.1514dupC	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1515	INFO_REALIGN_3_PRIME	chrX	120613774
chrX:120613988	A A	AT AT	1	a0001c0001t0056 a0001c0001t0056	1	HG04184.hp1 HG04184.hp1	3_prime_UTR_variant	MODIFIER	c.1728dupT c.1728dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1729	INFO_REALIGN_3_PRIME	chrX	120613988
chrX:120614089	A A	G G	1	a0001c0001t0055 a0001c0001t0055	1	HG03209.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.1825A>G c.1825A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1825		chrX	120614089
chrX:120614218	C C	T T	1	a0001c0001t0079 a0001c0001t0079	1	HG02155.hp2 HG02155.hp2	3_prime_UTR_variant	MODIFIER	c.1954C>T c.1954C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	1954		chrX	120614218
chrX:120614550	G G	A A	8	a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 others(5): Show a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 a0001c0001t0037 a0001c0001t0055 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082	19	HG01168.hp1 HG01169.hp2 HG01243.hp1 others(16): Show HG01168.hp1 HG01169.hp2 HG01243.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02630.hp2 HG02717.hp1 HG02809.hp1 HG02896.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03209.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.2286G>A c.2286G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2286		chrX	120614550
chrX:120614624	A A	C C	3	a0001c0001t0028 a0001c0001t0077 a0001c0001t0078 a0001c0001t0028 a0001c0001t0077 a0001c0001t0078	4	HG02145.hp1 HG03471.hp1 HG06807.hp2 others(1): Show HG02145.hp1 HG03471.hp1 HG06807.hp2 NA19043.hp1	3_prime_UTR_variant	MODIFIER	c.2360A>C c.2360A>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2360		chrX	120614624
chrX:120614638	T T	TA TA	1	a0001c0001t0038 a0001c0001t0038	1	NA19091.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.2375dupA c.2375dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2376	INFO_REALIGN_3_PRIME	chrX	120614638
chrX:120614738	A A	G G	1	a0001c0001t0060 a0001c0001t0060	1	NA18947.hp1 NA18947.hp1	3_prime_UTR_variant	MODIFIER	c.2474A>G c.2474A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2474		chrX	120614738
chrX:120614784	G G	GT GT	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.2526dupT c.2526dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2527	INFO_REALIGN_3_PRIME	chrX	120614784
chrX:120614835	A A	G G	18	a0001c0001t0002 a0001c0001t0008 a0001c0001t0011 others(15): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0011 a0001c0001t0014 a0001c0001t0033 a0001c0001t0034 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0056 a0001c0001t0063 a0001c0001t0083 a0001c0001t0088 a0002c0002t0062	84	HG00323.hp1 HG00408.hp2 HG00438.hp1 others(81): Show HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01069.hp1 HG01123.hp1 HG01192.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01993.hp1 HG02040.hp1 HG02074.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp1 HG02559.hp1 HG02683.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG02976.hp2 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03654.hp1 HG03704.hp2 HG04184.hp1 NA18612.hp1 NA18906.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18969.hp1 NA18973.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19005.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19060.hp1 NA19064.hp1 NA19065.hp2 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19081.hp2 NA19084.hp2 NA19240.hp1	3_prime_UTR_variant	MODIFIER	c.2571A>G c.2571A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2571		chrX	120614835
chrX:120614839	A A	G G	12	a0001c0001t0004 a0001c0001t0007 a0001c0001t0017 others(9): Show a0001c0001t0004 a0001c0001t0007 a0001c0001t0017 a0001c0001t0020 a0001c0001t0022 a0001c0001t0031 a0001c0001t0038 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047	41	HG00423.hp1 HG00639.hp2 HG00733.hp2 others(38): Show HG00423.hp1 HG00639.hp2 HG00733.hp2 HG01109.hp1 HG01167.hp1 HG01169.hp1 HG01884.hp1 HG01934.hp1 HG02027.hp1 HG02080.hp2 HG02109.hp1 HG02280.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG03041.hp2 HG03834.hp1 NA18939.hp1 NA18946.hp2 NA18951.hp1 NA18957.hp2 NA18965.hp1 NA18968.hp1 NA18970.hp1 NA18977.hp1 NA18980.hp2 NA18989.hp1 NA18990.hp1 NA19002.hp2 NA19006.hp1 NA19030.hp2 NA19057.hp1 NA19062.hp1 NA19067.hp1 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19084.hp1 NA19088.hp1 NA19090.hp2 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.2575A>G c.2575A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	2575		chrX	120614839
chrX:120615288	CA CA	C C	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.3028delA c.3028delA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3028	INFO_REALIGN_3_PRIME	chrX	120615288
chrX:120615323	A A	G G	8	a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 others(5): Show a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 a0001c0001t0037 a0001c0001t0055 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082	19	HG01168.hp1 HG01169.hp2 HG01243.hp1 others(16): Show HG01168.hp1 HG01169.hp2 HG01243.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02630.hp2 HG02717.hp1 HG02809.hp1 HG02896.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03209.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.3059A>G c.3059A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3059		chrX	120615323
chrX:120615635	A A	T T	2	a0001c0001t0019 a0001c0001t0085 a0001c0001t0019 a0001c0001t0085	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.3371A>T c.3371A>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3371		chrX	120615635
chrX:120615644	T T	TA TA	1	a0001c0001t0043 a0001c0001t0043	1	NA18946.hp2 NA18946.hp2	3_prime_UTR_variant	MODIFIER	c.3390dupA c.3390dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3391	INFO_REALIGN_3_PRIME	chrX	120615644
chrX:120615850	T T	A A	1	a0001c0001t0048 a0001c0001t0048	1	HG02559.hp1 HG02559.hp1	3_prime_UTR_variant	MODIFIER	c.3586T>A c.3586T>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3586		chrX	120615850
chrX:120615897	T T	TC TC	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.3637dupC c.3637dupC	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3638	INFO_REALIGN_3_PRIME	chrX	120615897
chrX:120615954	C C	T T	1	a0001c0001t0078 a0001c0001t0078	1	HG06807.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.3690C>T c.3690C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3690		chrX	120615954
chrX:120616113	T T	C C	1	a0001c0001t0021 a0001c0001t0021	2	HG02717.hp1 HG03098.hp1 HG02717.hp1 HG03098.hp1	3_prime_UTR_variant	MODIFIER	c.3849T>C c.3849T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3849		chrX	120616113
chrX:120616151	CTTTG CTTTG	C C	1	a0001c0001t0031 a0001c0001t0031	1	HG02080.hp2 HG02080.hp2	3_prime_UTR_variant	MODIFIER	c.3893_3896delTTGT c.3893_3896delTTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	3893	INFO_REALIGN_3_PRIME	chrX	120616151
chrX:120616321	A A	AGATT AGATT	59	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(56): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0063 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0087 a0001c0001t0088 a0002c0002t0062	199	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(196): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.4060_4061insTGAT c.4060_4061insTGAT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4061	INFO_REALIGN_3_PRIME	chrX	120616321
chrX:120616452	T T	C C	9	a0001c0001t0004 a0001c0001t0020 a0001c0001t0031 others(6): Show a0001c0001t0004 a0001c0001t0020 a0001c0001t0031 a0001c0001t0038 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047	29	HG00423.hp1 HG00733.hp2 HG01934.hp1 others(26): Show HG00423.hp1 HG00733.hp2 HG01934.hp1 HG02027.hp1 HG02080.hp2 HG03834.hp1 NA18939.hp1 NA18946.hp2 NA18951.hp1 NA18957.hp2 NA18965.hp1 NA18968.hp1 NA18970.hp1 NA18977.hp1 NA18980.hp2 NA18989.hp1 NA18990.hp1 NA19002.hp2 NA19006.hp1 NA19057.hp1 NA19062.hp1 NA19067.hp1 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19084.hp1 NA19088.hp1 NA19090.hp2 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.4188T>C c.4188T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4188		chrX	120616452
chrX:120616554	T T	C C	1	a0001c0001t0026 a0001c0001t0026	2	HG02015.hp1 NA19065.hp1 HG02015.hp1 NA19065.hp1	3_prime_UTR_variant	MODIFIER	c.4290T>C c.4290T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4290		chrX	120616554
chrX:120616897	A A	T T	1	a0001c0001t0015 a0001c0001t0015	3	HG02622.hp2 HG03225.hp1 NA20129.hp1 HG02622.hp2 HG03225.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.4633A>T c.4633A>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4633		chrX	120616897
chrX:120617080	G G	A A	58	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(55): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0063 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084 a0001c0001t0087 a0001c0001t0088 a0002c0002t0062	199	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(196): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.4816G>A c.4816G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4816		chrX	120617080
chrX:120617159	T T	TA TA	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.4898dupA c.4898dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4899	INFO_REALIGN_3_PRIME	chrX	120617159
chrX:120617180	T T	TTTG TTTG	1	a0001c0001t0085 a0001c0001t0085	1	NA21309.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.4940_4942dupGTT c.4940_4942dupGTT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4943	INFO_REALIGN_3_PRIME	chrX	120617180
chrX:120617180	TTTG TTTG	T T	4	a0001c0001t0035 a0001c0001t0054 a0001c0001t0057 others(1): Show a0001c0001t0035 a0001c0001t0054 a0001c0001t0057 a0001c0001t0089	4	HG02055.hp1 HG02922.hp1 NA18972.hp2 others(1): Show HG02055.hp1 HG02922.hp1 NA18972.hp2 NA18986.hp1	3_prime_UTR_variant	MODIFIER	c.4940_4942delGTT c.4940_4942delGTT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4940	INFO_REALIGN_3_PRIME	chrX	120617180
chrX:120617218	G G	A A	1	a0001c0001t0058 a0001c0001t0058	1	HG01175.hp1 HG01175.hp1	3_prime_UTR_variant	MODIFIER	c.4954G>A c.4954G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	4954		chrX	120617218
chrX:120617285	G G	C C	1	a0001c0001t0067 a0001c0001t0067	1	HG01943.hp1 HG01943.hp1	3_prime_UTR_variant	MODIFIER	c.5021G>C c.5021G>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5021		chrX	120617285
chrX:120617316	C C	T T	1	a0001c0001t0053 a0001c0001t0053	1	HG03486.hp2 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.5052C>T c.5052C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5052		chrX	120617316
chrX:120617344	A A	AC AC	1	a0002c0002t0062 a0002c0002t0062	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.5082dupC c.5082dupC	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5083	INFO_REALIGN_3_PRIME	chrX	120617344
chrX:120617487	C C	T T	6	a0001c0001t0010 a0001c0001t0026 a0001c0001t0065 others(3): Show a0001c0001t0010 a0001c0001t0026 a0001c0001t0065 a0001c0001t0066 a0001c0001t0075 a0001c0001t0076	12	HG02015.hp1 NA18942.hp1 NA18949.hp2 others(9): Show HG02015.hp1 NA18942.hp1 NA18949.hp2 NA18952.hp1 NA18964.hp1 NA18967.hp1 NA18972.hp1 NA18978.hp1 NA19055.hp1 NA19063.hp1 NA19065.hp1 NA19077.hp2	3_prime_UTR_variant	MODIFIER	c.5223C>T c.5223C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5223		chrX	120617487
chrX:120617739	G G	A A	1	a0001c0001t0084 a0001c0001t0084	1	HG02698.hp1 HG02698.hp1	3_prime_UTR_variant	MODIFIER	c.5475G>A c.5475G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5475		chrX	120617739
chrX:120617795	A A	G G	1	a0001c0001t0074 a0001c0001t0074	1	NA19076.hp1 NA19076.hp1	3_prime_UTR_variant	MODIFIER	c.5531A>G c.5531A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5531		chrX	120617795
chrX:120617997	T T	TA TA	1	a0001c0001t0049 a0001c0001t0049	1	HG02040.hp1 HG02040.hp1	3_prime_UTR_variant	MODIFIER	c.5734dupA c.5734dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5735	INFO_REALIGN_3_PRIME	chrX	120617997
chrX:120618179	A A	G G	1	a0001c0001t0082 a0001c0001t0082	1	NA21309.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.5915A>G c.5915A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	5915		chrX	120618179
chrX:120618279	T T	C C	1	a0001c0001t0039 a0001c0001t0039	1	HG02818.hp2 HG02818.hp2	3_prime_UTR_variant	MODIFIER	c.6015T>C c.6015T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6015		chrX	120618279
chrX:120618280	CATG CATG	C C	2	a0001c0001t0035 a0001c0001t0057 a0001c0001t0035 a0001c0001t0057	2	HG02055.hp1 HG02922.hp1 HG02055.hp1 HG02922.hp1	3_prime_UTR_variant	MODIFIER	c.6020_6022delATG c.6020_6022delATG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6020	INFO_REALIGN_3_PRIME	chrX	120618280
chrX:120618293	A A	G G	1	a0001c0001t0086 a0001c0001t0086	1	NA20905.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.6029A>G c.6029A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6029		chrX	120618293
chrX:120618374	T T	C C	2	a0001c0001t0019 a0001c0001t0085 a0001c0001t0019 a0001c0001t0085	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.6110T>C c.6110T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6110		chrX	120618374
chrX:120618893	A A	C C	1	a0001c0001t0023 a0001c0001t0023	2	HG02723.hp1 NA20300.hp1 HG02723.hp1 NA20300.hp1	3_prime_UTR_variant	MODIFIER	c.6629A>C c.6629A>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6629		chrX	120618893
chrX:120618930	A A	G G	1	a0001c0001t0055 a0001c0001t0055	1	HG03209.hp1 HG03209.hp1	3_prime_UTR_variant	MODIFIER	c.6666A>G c.6666A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6666		chrX	120618930
chrX:120619022	A A	G G	8	a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 others(5): Show a0001c0001t0005 a0001c0001t0021 a0001c0001t0036 a0001c0001t0037 a0001c0001t0055 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082	19	HG01168.hp1 HG01169.hp2 HG01243.hp1 others(16): Show HG01168.hp1 HG01169.hp2 HG01243.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02630.hp2 HG02717.hp1 HG02809.hp1 HG02896.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03098.hp1 HG03209.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.6758A>G c.6758A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6758		chrX	120619022
chrX:120619195	A A	T T	1	a0001c0001t0078 a0001c0001t0078	1	HG06807.hp2 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.6931A>T c.6931A>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	6931		chrX	120619195
chrX:120619271	A A	G G	1	a0001c0001t0047 a0001c0001t0047	1	NA19079.hp1 NA19079.hp1	3_prime_UTR_variant	MODIFIER	c.7007A>G c.7007A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7007		chrX	120619271
chrX:120619272	T T	C C	10	a0001c0001t0003 a0001c0001t0024 a0001c0001t0032 others(7): Show a0001c0001t0003 a0001c0001t0024 a0001c0001t0032 a0001c0001t0040 a0001c0001t0041 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0084	38	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01978.hp1 HG01993.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18947.hp1 NA18951.hp2 NA18956.hp2 NA18969.hp2 NA18974.hp1 NA18975.hp1 NA19010.hp1 NA19058.hp1 NA19078.hp2	3_prime_UTR_variant	MODIFIER	c.7008T>C c.7008T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7008		chrX	120619272
chrX:120619453	C C	G G	2	a0001c0001t0072 a0001c0001t0073 a0001c0001t0072 a0001c0001t0073	2	HG02647.hp1 HG03486.hp1 HG02647.hp1 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.7189C>G c.7189C>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7189		chrX	120619453
chrX:120619554	C C	T T	1	a0001c0001t0019 a0001c0001t0019	2	HG00673.hp1 HG03942.hp1 HG00673.hp1 HG03942.hp1	3_prime_UTR_variant	MODIFIER	c.7290C>T c.7290C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7290		chrX	120619554
chrX:120619620	T T	C C	4	a0001c0001t0015 a0001c0001t0035 a0001c0001t0057 others(1): Show a0001c0001t0015 a0001c0001t0035 a0001c0001t0057 a0001c0001t0087	6	HG02055.hp1 HG02257.hp1 HG02622.hp2 others(3): Show HG02055.hp1 HG02257.hp1 HG02622.hp2 HG02922.hp1 HG03225.hp1 NA20129.hp1	3_prime_UTR_variant	MODIFIER	c.7356T>C c.7356T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7356		chrX	120619620
chrX:120619938	CAT CAT	C C	1	a0001c0001t0052 a0001c0001t0052	1	HG00438.hp1 HG00438.hp1	3_prime_UTR_variant	MODIFIER	c.7675_7676delAT c.7675_7676delAT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7675		chrX	120619938
chrX:120620107	C C	G G	2	a0001c0001t0035 a0001c0001t0057 a0001c0001t0035 a0001c0001t0057	2	HG02055.hp1 HG02922.hp1 HG02055.hp1 HG02922.hp1	3_prime_UTR_variant	MODIFIER	c.7843C>G c.7843C>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7843		chrX	120620107
chrX:120620112	C C	T T	85	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(82): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0020 a0001c0001t0021 a0001c0001t0022 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0063 a0001c0001t0064 a0001c0001t0065 a0001c0001t0066 a0001c0001t0067 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0072 a0001c0001t0073 a0001c0001t0074 a0001c0001t0075 a0001c0001t0076 a0001c0001t0078 a0001c0001t0079 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0086 a0001c0001t0087 a0001c0001t0088 a0001c0001t0089 a0002c0002t0062	308	HG00140.hp1 HG00280.hp1 HG00323.hp1 others(305): Show HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00738.hp1 HG00741.hp2 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18977.hp1 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19055.hp1 NA19056.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.7848C>T c.7848C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7848		chrX	120620112
chrX:120620144	T T	C C	2	a0001c0001t0019 a0001c0001t0085 a0001c0001t0019 a0001c0001t0085	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.7880T>C c.7880T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7880		chrX	120620144
chrX:120620232	CG CG	C C	1	a0001c0001t0044 a0001c0001t0044	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.7971delG c.7971delG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	7971	INFO_REALIGN_3_PRIME	chrX	120620232
chrX:120620329	C C	CA CA	1	a0001c0001t0050 a0001c0001t0050	1	NA18940.hp1 NA18940.hp1	3_prime_UTR_variant	MODIFIER	c.8070dupA c.8070dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8071	INFO_REALIGN_3_PRIME	chrX	120620329
chrX:120620461	C C	CA CA	3	a0001c0001t0027 a0001c0001t0072 a0001c0001t0075 a0001c0001t0027 a0001c0001t0072 a0001c0001t0075	4	HG02647.hp1 HG02738.hp1 HG04115.hp1 others(1): Show HG02647.hp1 HG02738.hp1 HG04115.hp1 NA18978.hp1	3_prime_UTR_variant	MODIFIER	c.8220dupA c.8220dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8221	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620461	CA CA	C C	5	a0001c0001t0009 a0001c0001t0024 a0001c0001t0036 others(2): Show a0001c0001t0009 a0001c0001t0024 a0001c0001t0036 a0001c0001t0070 a0001c0001t0076	11	HG02155.hp1 HG02486.hp1 HG02559.hp2 others(8): Show HG02155.hp1 HG02486.hp1 HG02559.hp2 HG02630.hp2 HG03688.hp1 NA18956.hp2 NA18964.hp1 NA18966.hp1 NA18995.hp1 NA18999.hp1 NA19010.hp2	3_prime_UTR_variant	MODIFIER	c.8220delA c.8220delA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8220	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620461	CAA CAA	C C	21	a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 others(18): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0032 a0001c0001t0040 a0001c0001t0041 a0001c0001t0045 a0001c0001t0049 a0001c0001t0055 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0080 a0001c0001t0081 a0001c0001t0082 a0001c0001t0084 a0002c0002t0062	64	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(61): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01884.hp2 HG01978.hp1 HG01993.hp2 HG02040.hp1 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02622.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03098.hp1 HG03209.hp1 HG03490.hp1 HG03540.hp2 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18906.hp2 NA18947.hp1 NA18951.hp2 NA18969.hp2 NA18974.hp1 NA18975.hp1 NA18985.hp1 NA18994.hp1 NA18999.hp2 NA19010.hp1 NA19012.hp1 NA19058.hp1 NA19078.hp2 NA19090.hp2 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.8219_8220delAA c.8219_8220delAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8219	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620461	CAAA CAAA	C C	26	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 others(23): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 a0001c0001t0017 a0001c0001t0020 a0001c0001t0023 a0001c0001t0031 a0001c0001t0033 a0001c0001t0037 a0001c0001t0038 a0001c0001t0043 a0001c0001t0044 a0001c0001t0047 a0001c0001t0048 a0001c0001t0050 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0056 a0001c0001t0063 a0001c0001t0071 a0001c0001t0077 a0001c0001t0083 a0001c0001t0085	112	HG00408.hp2 HG00423.hp1 HG00438.hp1 others(109): Show HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00733.hp2 HG01069.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01192.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01934.hp1 HG01993.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02683.hp1 HG02723.hp1 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG03041.hp2 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03654.hp1 HG03704.hp2 HG04184.hp1 NA18612.hp1 NA18906.hp1 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18946.hp2 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp1 NA18970.hp1 NA18973.hp2 NA18977.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19011.hp1 NA19030.hp2 NA19043.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19091.hp1 NA19240.hp1 NA20300.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.8218_8220delAAA c.8218_8220delAAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8218	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620461	CAAAA CAAAA	C C	12	a0001c0001t0008 a0001c0001t0013 a0001c0001t0015 others(9): Show a0001c0001t0008 a0001c0001t0013 a0001c0001t0015 a0001c0001t0030 a0001c0001t0034 a0001c0001t0035 a0001c0001t0039 a0001c0001t0042 a0001c0001t0046 a0001c0001t0057 a0001c0001t0087 a0001c0001t0088	22	HG00323.hp1 HG01891.hp1 HG02055.hp1 others(19): Show HG00323.hp1 HG01891.hp1 HG02055.hp1 HG02257.hp1 HG02451.hp1 HG02622.hp2 HG02723.hp2 HG02818.hp1 HG02818.hp2 HG02922.hp1 HG02976.hp2 HG03195.hp2 HG03225.hp1 HG03834.hp1 NA18945.hp1 NA18980.hp1 NA19030.hp1 NA19056.hp1 NA19075.hp1 NA19078.hp1 NA20129.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.8217_8220delAAAA c.8217_8220delAAAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8217	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620461	CAAAAAAA CAAAAAAA	C C	1	a0001c0001t0067 a0001c0001t0067	1	HG01943.hp1 HG01943.hp1	3_prime_UTR_variant	MODIFIER	c.8214_8220delAAAA others(3): Show c.8214_8220delAAAAAAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8214	INFO_REALIGN_3_PRIME	chrX	120620461
chrX:120620502	C C	T T	1	a0001c0001t0070 a0001c0001t0070	1	HG02486.hp1 HG02486.hp1	3_prime_UTR_variant	MODIFIER	c.8238C>T c.8238C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8238		chrX	120620502
chrX:120620617	G G	A A	2	a0001c0001t0040 a0001c0001t0059 a0001c0001t0040 a0001c0001t0059	2	HG03490.hp1 HG03704.hp1 HG03490.hp1 HG03704.hp1	3_prime_UTR_variant	MODIFIER	c.8353G>A c.8353G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8353		chrX	120620617
chrX:120620632	T T	TA TA	2	a0001c0001t0030 a0001c0001t0042 a0001c0001t0030 a0001c0001t0042	2	HG01891.hp1 NA20129.hp2 HG01891.hp1 NA20129.hp2	3_prime_UTR_variant	MODIFIER	c.8382dupA c.8382dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8383	INFO_REALIGN_3_PRIME	chrX	120620632
chrX:120620741	A A	G G	1	a0001c0001t0069 a0001c0001t0069	1	HG02523.hp2 HG02523.hp2	3_prime_UTR_variant	MODIFIER	c.8477A>G c.8477A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8477		chrX	120620741
chrX:120621144	A A	T T	1	a0001c0001t0051 a0001c0001t0051	1	NA18906.hp1 NA18906.hp1	3_prime_UTR_variant	MODIFIER	c.8880A>T c.8880A>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	6/6	8880		chrX	120621144

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:120604320	C C	T T	1	a0001c0001t0017g0049 a0001c0001t0017g0049	1	HG00639.hp2 HG00639.hp2	intron_variant	MODIFIER	c.11+73C>T c.11+73C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5		chrX	120604320
chrX:120604435	C C	T T	1	a0001c0001t0001g0011 a0001c0001t0001g0011	3	HG00544.hp2 NA18978.hp2 NA19090.hp1 HG00544.hp2 NA18978.hp2 NA19090.hp1	intron_variant	MODIFIER	c.11+188C>T c.11+188C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5		chrX	120604435
chrX:120604675	T T	G G	1	a0001c0001t0002g0012 a0001c0001t0002g0012	2	HG02896.hp1 HG02897.hp1 HG02896.hp1 HG02897.hp1	intron_variant	MODIFIER	c.11+428T>G c.11+428T>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5		chrX	120604675
chrX:120604964	C C	CT CT	1	a0001c0001t0006g0048 a0001c0001t0006g0048	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.12-442dupT c.12-442dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrX	120604964
chrX:120605253	A A	G G	1	a0001c0001t0015g0047 a0001c0001t0015g0047	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.12-154A>G c.12-154A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5		chrX	120605253
chrX:120605311	G G	C C	1	a0001c0001t0010g0021 a0001c0001t0010g0021	1	NA18949.hp2 NA18949.hp2	intron_variant	MODIFIER	c.12-96G>C c.12-96G>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	1/5		chrX	120605311
chrX:120605654	C C	T T	1	a0001c0001t0061g0046 a0001c0001t0061g0046	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.164+95C>T c.164+95C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	2/5		chrX	120605654
chrX:120605674	G G	A A	1	a0001c0001t0014g0022 a0001c0001t0014g0022	1	HG02273.hp1 HG02273.hp1	intron_variant	MODIFIER	c.164+115G>A c.164+115G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	2/5		chrX	120605674
chrX:120606278	TG TG	T T	1	a0001c0001t0074g0023 a0001c0001t0074g0023	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.262+107delG c.262+107delG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606278
chrX:120606538	C C	T T	3	a0001c0001t0015g0020 a0001c0001t0015g0047 a0001c0001t0087g0045 a0001c0001t0015g0020 a0001c0001t0015g0047 a0001c0001t0087g0045	4	HG02257.hp1 HG02622.hp2 HG03225.hp1 others(1): Show HG02257.hp1 HG02622.hp2 HG03225.hp1 NA20129.hp1	intron_variant	MODIFIER	c.262+362C>T c.262+362C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120606538
chrX:120606784	C C	CA CA	12	a0001c0001t0001g0006 a0001c0001t0001g0025 a0001c0001t0002g0007 others(9): Show a0001c0001t0001g0006 a0001c0001t0001g0025 a0001c0001t0002g0007 a0001c0001t0004g0026 a0001c0001t0009g0006 a0001c0001t0014g0007 a0001c0001t0018g0006 a0001c0001t0019g0014 a0001c0001t0023g0013 a0001c0001t0056g0007 a0001c0001t0085g0028 a0002c0002t0062g0027	23	HG00423.hp2 HG00558.hp2 HG00673.hp1 others(20): Show HG00423.hp2 HG00558.hp2 HG00673.hp1 HG01358.hp1 HG01891.hp2 HG02109.hp2 HG02135.hp1 HG02451.hp2 HG02723.hp1 HG03704.hp2 HG03927.hp1 HG03942.hp1 HG04184.hp1 NA18956.hp1 NA18985.hp1 NA18995.hp1 NA19009.hp1 NA19010.hp2 NA19011.hp1 NA19057.hp2 NA19067.hp1 NA20300.hp1 NA21309.hp2	intron_variant	MODIFIER	c.262+631dupA c.262+631dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606784
chrX:120606784	C C	CAA CAA	10	a0001c0001t0003g0004 a0001c0001t0024g0004 a0001c0001t0032g0004 others(7): Show a0001c0001t0003g0004 a0001c0001t0024g0004 a0001c0001t0032g0004 a0001c0001t0040g0004 a0001c0001t0041g0004 a0001c0001t0058g0004 a0001c0001t0059g0004 a0001c0001t0060g0004 a0001c0001t0061g0046 a0001c0001t0084g0004	37	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(34): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01978.hp1 HG01993.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG03017.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18947.hp1 NA18951.hp2 NA18956.hp2 NA18969.hp2 NA18974.hp1 NA18975.hp1 NA19010.hp1 NA19058.hp1 NA19078.hp2	intron_variant	MODIFIER	c.262+630_262+631dup others(2): Show c.262+630_262+631dupAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606784
chrX:120606784	C C	CAAA CAAA	1	a0001c0001t0003g0024 a0001c0001t0003g0024	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.262+629_262+631dup others(3): Show c.262+629_262+631dupAAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606784
chrX:120606784	CA CA	C C	12	a0001c0001t0001g0008 a0001c0001t0002g0009 a0001c0001t0004g0043 others(9): Show a0001c0001t0001g0008 a0001c0001t0002g0009 a0001c0001t0004g0043 a0001c0001t0005g0010 a0001c0001t0007g0042 a0001c0001t0015g0020 a0001c0001t0015g0047 a0001c0001t0017g0049 a0001c0001t0025g0008 a0001c0001t0035g0019 a0001c0001t0055g0010 a0001c0001t0057g0019	18	HG00639.hp2 HG01256.hp1 HG01496.hp1 others(15): Show HG00639.hp2 HG01256.hp1 HG01496.hp1 HG02055.hp1 HG02615.hp1 HG02622.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03209.hp1 HG03225.hp1 NA18906.hp2 NA18941.hp1 NA18953.hp1 NA18959.hp1 NA18965.hp1 NA20129.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.262+631delA c.262+631delA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606784
chrX:120606784	CAA CAA	C C	1	a0001c0001t0006g0044 a0001c0001t0006g0044	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.262+630_262+631del others(2): Show c.262+630_262+631delAA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120606784
chrX:120606913	G G	C C	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.262+737G>C c.262+737G>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120606913
chrX:120607007	C C	T T	1	a0001c0001t0019g0014 a0001c0001t0019g0014	2	HG00673.hp1 HG03942.hp1 HG00673.hp1 HG03942.hp1	intron_variant	MODIFIER	c.262+831C>T c.262+831C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120607007
chrX:120607086	T T	G G	43	a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 others(40): Show a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0012 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0004g0003 a0001c0001t0004g0026 a0001c0001t0004g0031 a0001c0001t0004g0043 a0001c0001t0007g0003 a0001c0001t0007g0042 a0001c0001t0008g0002 a0001c0001t0008g0003 a0001c0001t0011g0002 a0001c0001t0011g0030 a0001c0001t0014g0002 a0001c0001t0014g0007 a0001c0001t0014g0022 a0001c0001t0017g0003 a0001c0001t0017g0049 a0001c0001t0020g0003 a0001c0001t0022g0003 a0001c0001t0031g0003 a0001c0001t0033g0002 a0001c0001t0034g0003 a0001c0001t0038g0003 a0001c0001t0043g0003 a0001c0001t0044g0003 a0001c0001t0045g0003 a0001c0001t0046g0003 a0001c0001t0047g0003 a0001c0001t0048g0002 a0001c0001t0049g0002 a0001c0001t0050g0002 a0001c0001t0051g0002 a0001c0001t0052g0002 a0001c0001t0053g0002 a0001c0001t0054g0002 a0001c0001t0056g0007 a0001c0001t0063g0002 a0001c0001t0083g0002 a0001c0001t0088g0003	124	HG00323.hp1 HG00408.hp2 HG00423.hp1 others(121): Show HG00323.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00733.hp2 HG01069.hp1 HG01109.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01192.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01934.hp1 HG01993.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02273.hp1 HG02280.hp1 HG02280.hp2 HG02293.hp2 HG02451.hp1 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02683.hp1 HG02818.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03654.hp1 HG03704.hp2 HG03834.hp1 HG04184.hp1 NA18612.hp1 NA18906.hp1 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp1 NA18970.hp1 NA18973.hp2 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp2 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1	intron_variant	MODIFIER	c.262+910T>G c.262+910T>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120607086
chrX:120607279	C C	A A	1	a0001c0001t0070g0033 a0001c0001t0070g0033	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.263-946C>A c.263-946C>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120607279
chrX:120607477	T T	A A	2	a0001c0001t0072g0015 a0001c0001t0073g0015 a0001c0001t0072g0015 a0001c0001t0073g0015	2	HG02647.hp1 HG03486.hp1 HG02647.hp1 HG03486.hp1	intron_variant	MODIFIER	c.263-748T>A c.263-748T>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120607477
chrX:120607838	G G	GT GT	1	a0001c0001t0010g0041 a0001c0001t0010g0041	1	NA18967.hp1 NA18967.hp1	intron_variant	MODIFIER	c.263-380dupT c.263-380dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120607838
chrX:120607931	C C	T T	11	a0001c0001t0003g0004 a0001c0001t0003g0024 a0001c0001t0024g0004 others(8): Show a0001c0001t0003g0004 a0001c0001t0003g0024 a0001c0001t0024g0004 a0001c0001t0032g0004 a0001c0001t0040g0004 a0001c0001t0041g0004 a0001c0001t0058g0004 a0001c0001t0059g0004 a0001c0001t0060g0004 a0001c0001t0061g0046 a0001c0001t0084g0004	38	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01978.hp1 HG01993.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18947.hp1 NA18951.hp2 NA18956.hp2 NA18969.hp2 NA18974.hp1 NA18975.hp1 NA19010.hp1 NA19058.hp1 NA19078.hp2	intron_variant	MODIFIER	c.263-294C>T c.263-294C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5		chrX	120607931
chrX:120608004	G G	GT GT	2	a0001c0001t0072g0015 a0001c0001t0073g0015 a0001c0001t0072g0015 a0001c0001t0073g0015	2	HG02647.hp1 HG03486.hp1 HG02647.hp1 HG03486.hp1	intron_variant	MODIFIER	c.263-220dupT c.263-220dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	3/5	INFO_REALIGN_3_PRIME	chrX	120608004
chrX:120608384	G G	GA GA	1	a0002c0002t0062g0027 a0002c0002t0062g0027	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.396+31dupA c.396+31dupA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120608384
chrX:120608418	C C	T T	1	a0001c0001t0028g0040 a0001c0001t0028g0040	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.396+60C>T c.396+60C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120608418
chrX:120608447	G G	A A	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.396+89G>A c.396+89G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120608447
chrX:120608590	G G	A A	1	a0001c0001t0011g0030 a0001c0001t0011g0030	1	HG00642.hp1 HG00642.hp1	intron_variant	MODIFIER	c.396+232G>A c.396+232G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120608590
chrX:120608622	G G	A A	2	a0001c0001t0019g0014 a0001c0001t0085g0028 a0001c0001t0019g0014 a0001c0001t0085g0028	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	intron_variant	MODIFIER	c.396+264G>A c.396+264G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120608622
chrX:120608959	T T	C C	1	a0001c0001t0082g0034 a0001c0001t0082g0034	1	NA21309.hp1 NA21309.hp1	intron_variant	MODIFIER	c.396+601T>C c.396+601T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120608959
chrX:120609077	C C	A A	1	a0001c0001t0006g0048 a0001c0001t0006g0048	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.396+719C>A c.396+719C>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609077
chrX:120609120	G G	C C	2	a0001c0001t0019g0014 a0001c0001t0085g0028 a0001c0001t0019g0014 a0001c0001t0085g0028	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	intron_variant	MODIFIER	c.396+762G>C c.396+762G>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609120
chrX:120609326	G G	T T	1	a0001c0001t0023g0013 a0001c0001t0023g0013	2	HG02723.hp1 NA20300.hp1 HG02723.hp1 NA20300.hp1	intron_variant	MODIFIER	c.396+968G>T c.396+968G>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609326
chrX:120609339	C C	T T	24	a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 others(21): Show a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0012 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0008g0002 a0001c0001t0011g0002 a0001c0001t0011g0030 a0001c0001t0014g0002 a0001c0001t0014g0007 a0001c0001t0014g0022 a0001c0001t0033g0002 a0001c0001t0048g0002 a0001c0001t0049g0002 a0001c0001t0050g0002 a0001c0001t0051g0002 a0001c0001t0052g0002 a0001c0001t0053g0002 a0001c0001t0054g0002 a0001c0001t0056g0007 a0001c0001t0063g0002 a0001c0001t0083g0002 a0002c0002t0062g0027	81	HG00323.hp1 HG00408.hp2 HG00438.hp1 others(78): Show HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG01069.hp1 HG01123.hp1 HG01192.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01993.hp1 HG02040.hp1 HG02074.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02273.hp1 HG02280.hp2 HG02293.hp2 HG02559.hp1 HG02683.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02970.hp1 HG03130.hp1 HG03195.hp1 HG03486.hp2 HG03654.hp1 HG03704.hp2 HG04184.hp1 NA18612.hp1 NA18906.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18969.hp1 NA18973.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19005.hp1 NA19009.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp1 NA19060.hp1 NA19064.hp1 NA19065.hp2 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19081.hp2 NA19084.hp2 NA19240.hp1	intron_variant	MODIFIER	c.396+981C>T c.396+981C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609339
chrX:120609363	A A	G G	2	a0001c0001t0080g0018 a0001c0001t0081g0018 a0001c0001t0080g0018 a0001c0001t0081g0018	2	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	intron_variant	MODIFIER	c.396+1005A>G c.396+1005A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609363
chrX:120609371	C C	T T	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.396+1013C>T c.396+1013C>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609371
chrX:120609599	CT CT	C C	1	a0001c0001t0039g0035 a0001c0001t0039g0035	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.396+1246delT c.396+1246delT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120609599
chrX:120609805	AG AG	A A	2	a0001c0001t0035g0019 a0001c0001t0057g0019 a0001c0001t0035g0019 a0001c0001t0057g0019	2	HG02055.hp1 HG02922.hp1 HG02055.hp1 HG02922.hp1	intron_variant	MODIFIER	c.397-1205delG c.397-1205delG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609805
chrX:120609849	G G	GAGTGAGT others(31): Show GAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGA	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.397-1162_397-1161i others(40): Show c.397-1162_397-1161insAGTGAGTTCACCCTCTAAATCACCACGA TCAAAAGGGA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609849
chrX:120609850	G G	C C	1	a0001c0001t0001g0036 a0001c0001t0001g0036	1	HG04199.hp1 HG04199.hp1	intron_variant	MODIFIER	c.397-1161G>C c.397-1161G>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609850
chrX:120609896	G G	A A	1	a0001c0001t0027g0037 a0001c0001t0027g0037	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.397-1115G>A c.397-1115G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609896
chrX:120609952	A A	G G	1	a0001c0001t0005g0017 a0001c0001t0005g0017	2	HG02257.hp2 HG03540.hp2 HG02257.hp2 HG03540.hp2	intron_variant	MODIFIER	c.397-1059A>G c.397-1059A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120609952
chrX:120610155	G G	A A	77	a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 others(74): Show a0001c0001t0002g0002 a0001c0001t0002g0007 a0001c0001t0002g0009 a0001c0001t0002g0012 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0003g0004 a0001c0001t0003g0024 a0001c0001t0004g0003 a0001c0001t0004g0026 a0001c0001t0004g0031 a0001c0001t0004g0043 a0001c0001t0005g0005 a0001c0001t0005g0010 a0001c0001t0005g0017 a0001c0001t0007g0003 a0001c0001t0007g0042 a0001c0001t0008g0002 a0001c0001t0008g0003 a0001c0001t0011g0002 a0001c0001t0011g0030 a0001c0001t0013g0005 a0001c0001t0014g0002 a0001c0001t0014g0007 a0001c0001t0014g0022 a0001c0001t0015g0020 a0001c0001t0015g0047 a0001c0001t0017g0003 a0001c0001t0017g0049 a0001c0001t0019g0014 a0001c0001t0020g0003 a0001c0001t0021g0005 a0001c0001t0022g0003 a0001c0001t0023g0013 a0001c0001t0024g0004 a0001c0001t0030g0005 a0001c0001t0031g0003 a0001c0001t0032g0004 a0001c0001t0033g0002 a0001c0001t0034g0003 a0001c0001t0035g0019 a0001c0001t0036g0005 a0001c0001t0037g0005 a0001c0001t0038g0003 a0001c0001t0039g0035 a0001c0001t0040g0004 a0001c0001t0041g0004 a0001c0001t0042g0005 a0001c0001t0043g0003 a0001c0001t0044g0003 a0001c0001t0045g0003 a0001c0001t0046g0003 a0001c0001t0047g0003 a0001c0001t0048g0002 a0001c0001t0049g0002 a0001c0001t0050g0002 a0001c0001t0051g0002 a0001c0001t0052g0002 a0001c0001t0053g0002 a0001c0001t0054g0002 a0001c0001t0055g0010 a0001c0001t0056g0007 a0001c0001t0057g0019 a0001c0001t0058g0004 a0001c0001t0059g0004 a0001c0001t0060g0004 a0001c0001t0061g0046 a0001c0001t0063g0002 a0001c0001t0080g0018 a0001c0001t0081g0018 a0001c0001t0082g0034 a0001c0001t0083g0002 a0001c0001t0084g0004 a0001c0001t0085g0028 a0001c0001t0087g0045 a0001c0001t0088g0003 a0002c0002t0062g0027	199	HG00323.hp1 HG00323.hp2 HG00408.hp1 others(196): Show HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG00733.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp2 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01934.hp1 HG01978.hp1 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp1 HG02129.hp1 HG02132.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG03540.hp2 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18940.hp1 NA18941.hp2 NA18943.hp1 NA18945.hp1 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18954.hp1 NA18955.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18964.hp2 NA18965.hp1 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19005.hp1 NA19006.hp1 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19056.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19064.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19078.hp2 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.397-856G>A c.397-856G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610155
chrX:120610195	G G	A A	1	a0001c0001t0007g0042 a0001c0001t0007g0042	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.397-816G>A c.397-816G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610195
chrX:120610296	G G	GGT GGT	1	a0002c0002t0062g0027 a0002c0002t0062g0027	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.397-714_397-713ins others(2): Show c.397-714_397-713insTG	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120610296
chrX:120610337	G G	A A	2	a0001c0001t0019g0014 a0001c0001t0085g0028 a0001c0001t0019g0014 a0001c0001t0085g0028	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	intron_variant	MODIFIER	c.397-674G>A c.397-674G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610337
chrX:120610390	G G	A A	1	a0001c0001t0001g0038 a0001c0001t0001g0038	1	NA18957.hp1 NA18957.hp1	intron_variant	MODIFIER	c.397-621G>A c.397-621G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610390
chrX:120610570	G G	T T	1	a0001c0001t0001g0039 a0001c0001t0001g0039	1	NA18998.hp1 NA18998.hp1	intron_variant	MODIFIER	c.397-441G>T c.397-441G>T	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610570
chrX:120610618	CA CA	C C	1	a0001c0001t0023g0013 a0001c0001t0023g0013	2	HG02723.hp1 NA20300.hp1 HG02723.hp1 NA20300.hp1	intron_variant	MODIFIER	c.397-390delA c.397-390delA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120610618
chrX:120610743	G G	GT GT	1	a0002c0002t0062g0027 a0002c0002t0062g0027	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.397-264dupT c.397-264dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120610743
chrX:120610818	T T	C C	1	a0001c0001t0070g0033 a0001c0001t0070g0033	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.397-193T>C c.397-193T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610818
chrX:120610830	T T	G G	2	a0001c0001t0019g0014 a0001c0001t0085g0028 a0001c0001t0019g0014 a0001c0001t0085g0028	3	HG00673.hp1 HG03942.hp1 NA21309.hp2 HG00673.hp1 HG03942.hp1 NA21309.hp2	intron_variant	MODIFIER	c.397-181T>G c.397-181T>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5		chrX	120610830
chrX:120610979	GATAA GATAA	G G	3	a0001c0001t0028g0016 a0001c0001t0028g0040 a0001c0001t0077g0016 a0001c0001t0028g0016 a0001c0001t0028g0040 a0001c0001t0077g0016	3	HG02145.hp1 HG03471.hp1 NA19043.hp1 HG02145.hp1 HG03471.hp1 NA19043.hp1	intron_variant	MODIFIER	c.397-28_397-25delAA others(2): Show c.397-28_397-25delAATA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	4/5	INFO_REALIGN_3_PRIME	chrX	120610979
chrX:120611426	T T	C C	1	a0001c0001t0070g0033 a0001c0001t0070g0033	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.464+348T>C c.464+348T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5		chrX	120611426
chrX:120611640	G G	A A	1	a0001c0001t0006g0044 a0001c0001t0006g0044	1	HG01496.hp2 HG01496.hp2	intron_variant	MODIFIER	c.465-543G>A c.465-543G>A	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5		chrX	120611640
chrX:120611734	TA TA	T T	1	a0002c0002t0062g0027 a0002c0002t0062g0027	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.465-444delA c.465-444delA	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	120611734
chrX:120611867	AC AC	A A	1	a0002c0002t0062g0027 a0002c0002t0062g0027	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.465-313delC c.465-313delC	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	120611867
chrX:120611937	A A	AGTCTT AGTCTT	1	a0001c0001t0023g0013 a0001c0001t0023g0013	2	HG02723.hp1 NA20300.hp1 HG02723.hp1 NA20300.hp1	intron_variant	MODIFIER	c.465-243_465-239dup others(5): Show c.465-243_465-239dupCTTGT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	120611937
chrX:120611965	A A	G G	1	a0001c0001t0004g0031 a0001c0001t0004g0031	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.465-218A>G c.465-218A>G	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5		chrX	120611965
chrX:120612153	T T	C C	11	a0001c0001t0003g0004 a0001c0001t0003g0024 a0001c0001t0024g0004 others(8): Show a0001c0001t0003g0004 a0001c0001t0003g0024 a0001c0001t0024g0004 a0001c0001t0032g0004 a0001c0001t0040g0004 a0001c0001t0041g0004 a0001c0001t0058g0004 a0001c0001t0059g0004 a0001c0001t0060g0004 a0001c0001t0061g0046 a0001c0001t0084g0004	38	HG00323.hp2 HG00408.hp1 HG00639.hp1 others(35): Show HG00323.hp2 HG00408.hp1 HG00639.hp1 HG00741.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01175.hp2 HG01978.hp1 HG01993.hp2 HG02071.hp1 HG02080.hp1 HG02083.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp1 HG03017.hp1 HG03490.hp1 HG03688.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04204.hp1 HG04228.hp1 NA18947.hp1 NA18951.hp2 NA18956.hp2 NA18969.hp2 NA18974.hp1 NA18975.hp1 NA19010.hp1 NA19058.hp1 NA19078.hp2	intron_variant	MODIFIER	c.465-30T>C c.465-30T>C	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5		chrX	120612153
chrX:120612164	G G	GT GT	1	a0001c0001t0010g0021 a0001c0001t0010g0021	1	NA18949.hp2 NA18949.hp2	intron_variant	MODIFIER	c.465-11dupT c.465-11dupT	MCTS1	ENSG00000232119.8	transcript	ENST00000371317.10	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrX	120612164

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🧬 JoGo Online Haplotype Explorer MCTS1_chrX_120599101_120626159

JoGo Local Haplotype Explorer (on iGV) MCTS1_chrX_120599101_120626159

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 2)

TTranscript Level Haplotype Info (Total: 89)

GGenebody Level Haplotype Info (Total: 49)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 2)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 89)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 123)

Haplotype Details by Sample (Haploid Level) (Total: 316)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 95)

GGenebody Level Haplotype Variants (Intron) (Total: 60)

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Annotation (Repeats)

Annotation (SNP Array)